Salvia hispanica (chia): 125194124
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Entry
125194124 CDS
T09851
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125194124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125194124
03041 Spliceosome [BR:
shis03041
]
125194124
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125194124
Spliceosome [BR:
shis03041
]
Complex B
Other components
Prp19-related factors
125194124
Complex C
125194124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
UTP6_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
125194124
NCBI-ProteinID:
XP_047948131
LinkDB
All DBs
Position
6:complement(42965674..42970621)
Genome browser
AA seq
909 aa
AA seq
DB search
MSIAQDLYPTEEDYLYEEEVLRNPNNLKLWWRYLIAKSDAPFKKRAIIYERALKALPGSY
KLWHAYLRERLEIVRNLPITHSQYQTLNNTFERALATMHKMPRIWTMFLQSLTHQKLITR
TRRTFDRALCALPVTQHDRIWECYLVFVSQRGVPIDTSLRVYKRYLKYDPSHIEDFIEFL
VNSQLWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRQLLEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEDSVL
SIKMDNMDDSDEEDGNEDAIEEDDEEDDRLDIEKLRKKISCFWLKDDKDVDLRLARYEHL
MDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL
WVAFAKLYETHGDVSNARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNLKGALELMR
RATAEPSVEVKRRVAADGNEPVQMKVHKSLKLWTFYVDLEESLGTLESTRVVYEKILDLR
IATPQIIINYAMLLEEHKYFEDSFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLE
RAREIFEKAVEEAPAESVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKLGMYEI
YITRAADIFGLPKTREIYEQAIESRLPDKDVKVMCLRYAELEKNLGEIDRARALYKHASQ
FANPKSDPDFWKKWHEFEVQHGNEDTYREMRRIMRSVDASYSQTHFILPEYLMQKDQMQT
LDEAKDVLKKAGVAEDEMAALERQLLPTTNETSAKDGGRRLGFVSAGLQQNGETTANTED
IELPEDSDPEDEEKVEIAQKEIPDAVFGGLVRKRDEADEKGKEATDTENKENDGHLGALE
RIKRMRRGA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgctcaggatctctatcccaccgaagaggactacctctacgaagaagaggta
cttcgaaaccctaacaatctcaaattgtggtggcgatacctaatcgcgaagagcgacgcg
ccgttcaagaagcgcgccattatctacgagcgagctctcaaggccttgcccggaagctac
aagctgtggcacgcctatctccgcgagcgcctcgagatcgtgaggaatctaccgattact
cactcgcagtatcagacgctgaacaacactttcgagcgagccctcgccacgatgcacaag
atgccccgcatttggactatgtttttgcagtctctgacgcatcagaagctgattactcgg
acgcggcgcacgttcgaccgtgcattgtgcgcgctgccggttactcagcacgaccgaatc
tgggagtgttatctggtgttcgtgtcgcagaggggcgtgccgatagatacgtcgctgagg
gtgtacaagaggtacctgaagtatgatccaagtcatattgaggattttattgagttcttg
gtcaattcgcagttgtggcaggaggctgcggagaggttggctggggttttaaatgacgac
cagttttactctataaaggggaagacaaaacataggctatggttggaattgtgtgatttg
ttgactcagcatgccactgagatatcgggattgaatgtggatgcgataattagagggggg
attaggaagtttacggatgaagtggggagactgtggacttcattggctgattattatatt
aggagacagcttcttgagaaggccagagatatctttgaggaaggtatgacgactgtagtc
acagtgagggatttcagtgttatttttgatgcatattcacaatttgaggacagtgtgttg
tcaattaagatggacaatatggatgacagtgatgaagaagatgggaatgaggatgccata
gaggaggatgatgaggaggatgataggttggatattgagaagttgaggaagaagatcagc
tgtttttggttgaaggatgacaaggatgtggatttgcggttggcgagatatgagcatctg
atggacaggaggccggagttagctaacagtgtgcttttgaggcagaatcctcacaatgtg
gagcagtggcatcggagagttaagctttttgaagggaatcccacaaaacaaattttgact
tacacagaagctgtgaggaccgtggatcccatgaaggctgttgggaaaccccatactctg
tgggttgcatttgctaagttgtatgagactcatggagatgtttcaaatgcccgggtgatt
tttgataaggctgtgcaggttaattacaaggctgtcgatcatctagcaagcatttggtgt
gaatgggctgagatggagctcagacacaaaaatttaaagggtgcactggaactgatgagg
cgtgctactgctgaaccatctgtcgaggtcaagaggagagttgctgctgatggaaatgaa
ccagtgcaaatgaaggttcataaatcccttaaactttggacattttatgtggatttggag
gaaagcttgggtaccttggagtcaactcgtgtagtttatgagaaaatattggatctaaga
attgctactccccagattatcataaattatgcaatgcttctagaagaacacaagtacttt
gaagactcatttaaagtttatgagagaggtgtaaaaatatttaagtacccgcatgtgaaa
gatatatgggtcacatatctttccaaattcgttaagagatatggaaaatcaaagctggaa
cgagctagggagatatttgagaaggcagttgaagaggctcctgcagaatcagtgaaaccc
ctgtatcttcaatacgccaaattggaggaagactatggtctggccaaaagagcaatgcgg
gtgtatgatcaggctacaaaagctgtcccacctaatgagaagttgggcatgtatgagata
tatattaccagggcagctgacatattcggattaccaaaaactagggagatttatgagcaa
gctattgaatcacgactgccagacaaggatgtaaaggtcatgtgtttgagatatgctgaa
ctcgagaagaatcttggtgaaatcgatcgtgctcgtgcattatacaagcatgcatcacag
tttgctaatccaaaatctgatcctgacttctggaaaaagtggcatgaatttgaagtacag
catggaaacgaggatacatatcgggagatgcgcagaatcatgagaagtgttgatgctagc
tatagccagacgcactttatcctaccggagtatctgatgcaaaaggaccagatgcagacc
cttgacgaagctaaggatgttctcaagaaggcaggcgttgctgaggacgaaatggctgca
cttgagaggcaattactgcccactaccaatgaaaccagtgctaaagatggtggtagacga
ttaggattcgtgagtgctggtttgcagcaaaatggagagactacagcaaatacagaggat
atcgagcttccagaagatagtgatcccgaagatgaggagaaggttgagatcgcacagaaa
gaaattccagatgcagtgtttggaggattggtgcggaagagagacgaagcagacgagaag
ggtaaagaagcaactgatacggaaaacaaagagaacgatggccatctaggtgccttggag
agaatcaaacgaatgagacgaggcgcctag
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