Salvia hispanica (chia): 125194150
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Entry
125194150 CDS
T09851
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125194150
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125194150
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
TPR_1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_WDR19_1st
ANAPC3
Beta-prop_IFT140_1st
TPR_17
Motif
Other DBs
NCBI-GeneID:
125194150
NCBI-ProteinID:
XP_047948163
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Position
6:complement(14834282..14849668)
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AA seq
759 aa
AA seq
DB search
MDCSICFHDGNITDLINSRTLHNHNDFNHAVQMHSSLVRRLSLERELEGHRGCVNTIAWN
SEGSMLISGSDDTQVNIWSYSSRKLMDSIDTGHSANIFCTKFVPETSDELVVSGAADAEV
RLFNLSRLRRNGLEGSSISPSAVFRCHTRRVKKLAVEPGNPNLVWSASEDGTFRQHDFRE
GSSCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQPLALKSCDISSTRPHLVIVGGSDAF
ARLYDRRMLPPLSSSQNKLPPPPCVDYFCPMHLSDLGHSSLHPTHVAFSPNGEELLVNYS
GEHVYLMDVNNVLGNTVRYTSRDVSKLTSLSPKLDKAEVKSSFSGVSLNGFPVRNKAAVL
DKCRKLIRFAEKSLKGEPDRYYGIEACNEVLDGHGYEIDPTLVHECLCIRASLLLKRRWK
NDSHMAIRDCHRALKLNPSSTGALICMAEALSMLEKHKEALEFAFAAQSLAPSDFEIMER
VEHIKKSSAAAEADKTSMESDKRSRANYRAKRVLSLSDIIYHTEGENDTPSGPEREDSDY
DDELELDFETLIAAEGGHDVESDVLPGNLNLRIHRRGDLNLNAERVTGSFGSPVSSREDE
TVPKQSEVAIDMKQRYVGHCNTGTDIKQASFIGQRGEYIASGSDDGRWFIWEKKTGRLLK
MLHGDNAVVNCIQCHPYDCVIATSGIDSTIKIWTPTSPVPSSVAGDEGPEPSNVLEAMEE
NQRRLYCTREAILPFEILERFRMHEFAEGSFHPFECTQS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggactgctccatctgctttcacgatggcaacatcaccgacttgattaacagtcgcact
ctccacaatcataatgattttaaccatgctgtgcagatgcactcctcactcgtgcggagg
ctctcactggaaagagaactagaggggcaccgtggatgtgtgaatactatagcttggaat
tcagaaggctctatgttgatttcaggatctgatgatactcaagttaacatctggtcctat
tcaagtcgaaaacttatggactcaatcgacactggccattctgccaatattttctgtaca
aaattcgtccctgaaacttcagatgaacttgtggtttctggggcagcagacgccgaggtt
cgcctatttaatttgtcccgtttaaggagaaacggactggaggggagtagtatcagtcca
tcagcagttttccggtgtcacactaggagggttaaaaaattagctgtggaacctggaaat
cctaatctggtgtggagtgccagtgaagatgggacatttcggcagcatgattttcgtgag
ggttcttcttgtcctccagctgggtcttctcatcaagaatgtcgtaatgttcttcttgat
ttgcgatgcggagctaagaaatcactagcagatcctccaaagcagcctcttgctttgaag
tcttgtgatatcagttctactaggccccatttagtcattgtaggcggcagtgatgcattt
gcacgtctatatgatagaagaatgctgccgcctctatcatctagtcagaataagttgcca
ccacctccatgcgtggactacttttgcccaatgcatctatccgacctgggacattccagc
ttgcatcctactcatgttgcattcagtccaaatggggaggagcttcttgttaattatagt
ggggagcatgtatacctcatggatgttaataacgttttggggaatacagtgagatatacc
tcaagagatgtctcaaagctaaccagcctgagtcccaaactagacaaagcagaagtgaaa
tcatcgttttcaggggtatccttaaatggtttccctgtgagaaacaaagctgcagtactt
gataagtgcaggaaactaatccgttttgctgaaaaatcattgaaaggagaaccagatcgt
tattatggaattgaggcttgtaatgaagtgctggatggtcatggttatgagattgaccca
acattggtgcatgagtgtttgtgcatacgcgcctccttgttactcaagaggcggtggaaa
aatgattctcacatggctattagagactgtcacagagctctcaaactaaatccttcttca
actggggcactcatttgcatggctgaagcactgtccatgctggaaaaacataaggaagca
ttggagtttgcttttgcagctcaatctttagctccatctgattttgaaattatggagagg
gtggagcatataaagaagagttcggctgcagctgaagctgacaaaacaagcatggaaagt
gacaaaagatcaagggcaaattatcgagctaaaagagtgctttctctaagtgacataatc
taccatacagaaggagaaaatgatactccaagtggacctgaaagagaagactctgattac
gatgatgagcttgaactggattttgaaacattaatagctgccgaaggagggcatgatgtt
gagtccgatgttctcccaggaaacttaaatttgagaattcacaggagaggcgatttgaat
ttgaacgcagagagggtgactggctcttttggatcacccgtatcttcacgtgaagatgag
acagtgccaaaacagtctgaggtggctatagatatgaagcagagatatgttggccattgt
aatacaggcactgacataaagcaagccagttttattggccaaagaggtgaatatattgct
agcggaagtgatgatggtagatggtttatttgggaaaagaaaactgggcgattattgaag
atgctgcatggagataatgccgttgtcaactgtatacaatgccatccatatgattgtgtt
attgcaactagtggaatcgatagcacgataaagatctggactccaacatctccagtcccc
tccagtgttgctggggatgaaggaccagagccttcaaatgtgttagaagctatggaagag
aatcagcgcagattatattgcactcgtgaagctattttgccctttgaaattctggagcgt
ttccgaatgcatgagtttgcagaaggaagttttcatccatttgagtgcacacagagttga
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