Salvia hispanica (chia): 125194201
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Entry
125194201 CDS
T09851
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125194201
03036 Chromosome and associated proteins [BR:
shis03036
]
125194201
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125194201
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
125194201
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Spt6_S1
Tex_central_region
HHH_9
HHH_3
Tex_N
Iron_traffic
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
125194201
NCBI-ProteinID:
XP_047948242
LinkDB
All DBs
Position
6:9370594..9377576
Genome browser
AA seq
1451 aa
AA seq
DB search
MAGKNVISDDEDEIGVEEEERDEVPYGDRGGDRNDDDEEDDEEVRDEYEKDGFIVDDIEE
GEDEEEDQVDSDEEQKKRKRKKRDQFMLDEDDYELLQESNISVNRPKLESKKFKRLKKAR
QDAQEDPSRFSDEEEFNGSGNARRTGEEKLKHSFVGDDYGQPLEDIAEEDGQLEEEEDAD
IGEEDEMADFIVDEEDVDEHGAPVRRKKPKKSRQRPGISSSALQEAHEIFGDVEDLLRLR
KIDVRDSFGETSERSLEDQFDPSVLSEKYMTEKDDQIREIDIPERIQISEGSTGHPPTDE
FSVKMETEWICNQLISGVLPFFNRSGIHDEMKRHIARFLELIHVQKLDVPFIAMYRKEEI
LSLLKDPTEPEAGIENDINQKPALKWHQVLWAIQDLDQKWLLLLKRKIALQSYYTKRFEE
EKRRVYDETRLRLNEHLFQSITKSLEAVDSEREVDDVDSKFNLHFPTGEAVLDEGQFKRP
KRKSHYSSCSKAGLWEVASKFGYSSEQFGLQISLEKMRMDELEDVKETPAEMASNFTCTM
FETPQAVLKGARHMAAVEISFEPCVRKHVRSIFMDNAVVSASPTPDGNTAIDSFHQFYGI
KWLRDKPLNRFEDAQWLLIQKAEEEKLLQVSIKLPEVVLDKLISDSNDYYLSDGVSKSAQ
LWNEQRKLILNDALNNYLLSSMEKEARSLLTSRAKSWLLSDYGRLLWDKVSVAPYQRKEN
DVSSDEETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLHAGSISIHGQSGNEQQRKRND
QQRVRKFMMDHQPHIVVLGATNLSCTRLKDRIYEIMFKMVEDNPRDVGYEMDNLNVVFCD
ESLPHLYENSRISVDQLPSQEGIIRRAVGLGRHLQNPLAMVATLCGPGKEILSWKLNPLD
NFLTPDEKYGMVEQVMVDVTNQVGLDINLAASHEWLFAPLQFISGLGPRKAASLQRSLVR
AGAIFTRKDLLQSHGLGKKVFINAVGFLRVRRSGLTSSSSQFIDLLDDTRVHPESYILAQ
DLAKDIYLEDGNDDANDDDDVLEMAIEHVREKPHLLRAVDVHEYAVQKNHLNKKETLNDI
RLELMEGFQDRRSPFAEPCQDELFHMMTGETEETLSEGRIVQATVRNVQAQRASCVLESG
LTGILSKEDYMDDWRNIHDLSNKLRDGDILTCRIKSIQKNRYQVVLTCRGSDMRSNRYQS
HRMTDPYYHEERSTLQTVQEKARKEKELAKKCFKPRMIVHPHFQNITPDAAIKFLADKDP
GESVIRPSSRGLSILTLTMKVYDGVYANTLIEEGGKEHGDITSLLRIGKTLKIRKDTFED
LDEVMDRYVDPLVAHLKSMLNHRKFRTGTRSEIEELLRIEKAEDPSKSVYCFGISHEHPG
LFILTYIVHDSNPQHEFIGLYPQGFSLCNRMCKDIDRLSNYFKKLITGARDPAQSLPSVA
AMVPMRSPAMV
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaaaatgtgatctccgacgatgaagatgagatcggagtcgaagaagaagaa
agagacgaggtgccttatggagaccgaggtggtgatcgtaacgatgacgatgaagaagac
gatgaggaagtacgggatgaatatgaaaaggatggatttatagtggacgatatcgaggaa
ggagaggatgaggaagaagatcaagttgatagtgatgaggagcagaagaaaaggaaacga
aagaaaagggatcaattcatgcttgatgaggatgattacgaactcctccaggaaagcaat
atatctgtcaatcgtccaaagcttgagagtaagaagtttaagagactgaaaaaggctaga
caggatgcacaagaagatccgtccaggttttcagatgaagaagaatttaatggaagtggg
aatgctaggcgtactggtgaggagaagctcaagcatagctttgttggtgatgattatggg
caacctcttgaggatattgcagaggaggatggacagcttgaagaagaagaggatgcagac
attggcgaggaggatgagatggctgattttattgttgacgaagaagatgttgatgagcat
ggagcccctgtgaggagaaagaaaccaaagaaaagcagacagcgcccagggatttcttca
tccgcactccaggaagcacatgaaatttttggtgatgttgaagacctgcttaggctgcgg
aagatagatgtgagggacagctttggtgaaactagcgaaaggagtcttgaagatcagttt
gatcctagtgtactttctgaaaagtacatgacagaaaaggatgatcaaattcgggaaatc
gatattcctgaaagaatacagatatctgaaggaagtacaggccaccccccaacagatgag
tttagtgtcaaaatggagaccgagtggatatgcaatcaacttatcagtggtgtgctacct
tttttcaacaggagtggtattcatgatgagatgaagcggcatatagctagattcttggag
ttgattcacgttcagaagttagatgtcccattcattgccatgtacaggaaagaggaaata
ttaagccttttaaaggatccaactgaacctgaagctggtattgaaaatgatattaaccaa
aagcctgcactgaagtggcaccaggttctttgggcaattcaggacttggatcagaagtgg
cttcttcttctgaaaagaaaaattgctcttcagtcatactacactaagcggtttgaagaa
gagaaaagaagagtgtacgatgagacacgcctaagattaaatgaacatctctttcaatca
atcactaagtcgctcgaagctgttgattcagagagagaagtggatgatgtagactcaaaa
tttaatttgcatttccctacaggggaagctgtcctagatgaagggcagtttaaaagacca
aagagaaaatcacattacagcagttgtagcaaagctgggctgtgggaggttgcaagcaaa
tttggttacagctctgagcaatttggtttgcagatatctctggagaaaatgagaatggat
gaattggaggatgttaaggaaacaccagcggaaatggcttctaatttcacctgtacaatg
tttgagacacctcaagcagtgttgaaaggtgcaaggcacatggctgcagttgagattagc
tttgaaccctgtgttcggaaacatgtccgcagtatctttatggacaacgcagtagtgtca
gctagtcctacacctgatggaaacacagctattgattcttttcaccagttttatggaatt
aagtggttgagggacaaaccacttaacagatttgaggatgctcaatggcttttgattcag
aaagctgaggaggagaagcttttgcaagtttctataaagctgcctgaagtagtccttgat
aagttaataagcgactcgaatgattattatttgagtgatggtgtaagtaaatctgcgcag
ttatggaatgagcaaaggaaactgattcttaatgatgcattaaacaattatcttctttct
tcaatggaaaaagaagcaagatcactgctgacaagtagagcaaaatcatggctactctca
gattatgggaggctattgtgggataaagtatctgttgcaccataccaacggaaagaaaat
gatgtcagttctgatgaagaaactgcacccagggttatggcttgctgttggggccctgga
aagccagcgacaacctttgtgatgttggattcatctggagaagttttggatgtattgcat
gccggttccatcagcattcacggccaaagtggcaatgaacagcaacgtaaaagaaatgat
cagcagagagtgcgaaagtttatgatggaccatcaaccacatattgtagttttaggagct
actaatttgtcttgtacacggttgaaggatagaatatatgagataatgttcaagatggtg
gaagataatcctcgagatgttggctatgagatggataatctgaatgttgtcttttgcgat
gaatctcttccgcatctgtatgaaaattcacgcatctcagttgatcagcttccttcacaa
gaaggtatcattagacgtgctgtgggtcttggacgtcatcttcagaaccctttagcaatg
gttgccacattgtgtgggccgggtaaagagatattatcttggaagcttaatcctttggac
aactttcttactcctgatgagaagtatggaatggttgaacaagtgatggttgatgtaact
aaccaggtgggccttgatattaatctggccgccagtcatgaatggttatttgcccctcta
caatttatttctgggcttggtcccagaaaagcagcttctctccagaggtccctagtaaga
gcaggtgccatcttcactaggaaagacctgttgcaatctcatgggcttggaaaaaaagtt
tttattaatgcagttggcttcctccgagtgcgacgtagcggattgacttccagtagtagt
caatttattgatctgttagatgacaccagagttcatccggaatcatacattctcgcacaa
gatttggccaaggatatttatctggaggatgggaatgatgatgcaaatgatgacgacgat
gtcctggaaatggcaatcgagcatgtcagggaaaaaccacatttactgagagctgtagat
gttcatgaatatgctgtacagaaaaatcatctgaacaagaaagaaacccttaacgatatt
agattggaattgatggaaggctttcaggatcgtcgtagtccatttgcagaaccatgtcag
gatgagctgtttcacatgatgaccggtgagactgaagagacactctctgaaggaagaatt
gtgcaggccacggttcgaaacgtacaagctcagagagcaagttgtgtccttgaatctgga
ttaactggcatcctcagtaaggaggattatatggatgattggaggaatatccatgattta
agcaataagctgcgcgatggtgatattttgacttgcagaattaaatcaattcagaagaac
cgctatcaggtggttttaacttgtagaggaagtgatatgaggagtaaccgatatcagagt
cacagaatgacagatccttactatcatgaagaacgcagcactttgcaaactgtgcaggaa
aaagctcgcaaggagaaggagcttgctaagaagtgtttcaagccgaggatgatcgttcat
ccacacttccaaaatataacgcctgatgcagcgataaagtttttggctgacaaggatcct
ggtgaaagtgtcatacgtcctagttctcgtggactatcaattttgacattgacgatgaaa
gtttatgatggggtatacgctaacactctcattgaagaaggtggaaaagagcatggggat
atcaccagcttgcttcgaatagggaaaacactgaaaatcagaaaggatacatttgaagat
cttgatgaggtaatggatcgttatgtggatccactggtagctcatttgaagtccatgctg
aatcaccggaagttccggacgggtaccagaagtgaaattgaagagctcctcagaattgaa
aaggctgaggatcctagtaaaagtgtatattgctttggaatatctcatgagcatcctggc
ctattcatcttgacttacatagtacatgattctaatcctcagcatgagttcataggtctc
tatccgcagggatttagtttatgtaatcgaatgtgcaaggatattgaccgtctttcgaat
tattttaagaaacttatcactggcgcacgtgatcctgctcagtcgctaccatcagttgct
gctatggtgccaatgaggagtcctgctatggtataa
DBGET
integrated database retrieval system
