Salvia hispanica (chia): 125194208
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Entry
125194208 CDS
T09851
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125194208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125194208
03019 Messenger RNA biogenesis [BR:
shis03019
]
125194208
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125194208
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125194208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
125194208
NCBI-ProteinID:
XP_047948259
LinkDB
All DBs
Position
6:36169383..36175321
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AA seq
687 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSGPAHPTASVPVIQSALDSNAAAAAANSHNPSAVPHPAAHAAE
GLGGGGARRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNKFS
QNRNPIYAQPAEKSQFPQGPNGIHQVGKPGTTEPGNAHPQPQQTQQLQQQGSQVQNQITA
NGQQSQASRTAIPLPQGTSRYFVVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDAVDN
VILIFSVNKTRHFQGCAKMISRIGGSVGGGNWKHAHGTAHYGRNFAVKWLKLCELSFDKT
RHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSDLMAVSVAAEQKREEEKAKG
VNLDNGSDNPDIVPFEDNEEEEEEESDEEDESPGQGFAGQGRGRGRGMMWPPHMPLARGA
RPFPGMRGFPPNMMGSDGFSYGPVNPDGFPMPDLFGMAPRGFGPYPRFSGDFAGPASGMM
FPGRPPAGGFGMMMGPGRPPFMGGMGVGGAARGSRPGGMPPFYPPPQQQQPYQNPGRSKR
DQKAPSSDQNESSDQAKGQDIAGPNDEGRNQQRGKAQQDDHYSGGNSYRNDESESEDEAP
RRSRHGEGKKKRRSMEGDGTAVSVENI
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagatgggggtttaagctttgacttcgagggcgggttggattcggggccc
gcgcatccgactgcatccgtgcccgtaatccaatcggcgttggattccaatgcggctgcg
gccgccgccaattctcacaatccttcggcggttccccatccggcggcgcatgcggcggag
gggttgggaggcggcggggcgaggaggagcttcaggcagacggtgtgccggcactggctg
cgatctctgtgcatgaaaggcgatgcctgtgggttccttcatcagtacgataagtcgcgg
atgccggtttgccggtttttccgcctctatggggagtgccgtgagcaggattgtgtgtat
aaacatacgaatgaagatatcaaggaatgcaatatgtacaagctaggattttgtccaaat
ggtcctgattgtaggtataggcatgcaaagttacctggacctccaccccctgtagaagaa
gttcttcagaaaattcagcaattggcttcatataactacggaaactcaaacaaattttct
cagaaccgtaatcctatatatgctcaaccggcagaaaaatctcagtttccacaaggaccc
aatggtatacatcaagtaggaaaacctggtactacagaacctggtaatgctcatccacag
ccacaacaaacacagcagcttcagcagcagggcagccaagttcaaaaccagattacagcc
aacggccagcaaagccaagctagtaggactgctatacccctgccccaaggaacttctagg
tactttgtggtgaaaagttgcaacagagagaatctggaactatctgtacaacaaggtgta
tgggcaacacagagaagcaatgaggctaaacttaatgaagcatttgatgctgttgacaat
gtgattttgatcttttcagttaacaagactagacattttcagggttgtgcaaagatgatt
tccagaattggtggatccgtaggtggagggaactggaagcatgcccatgggactgctcat
tatggacgtaactttgctgtcaaatggttgaagctctgtgaactatcctttgacaaaact
cggcatttgagaaacccatataatgagaacttgccagtaaagatcagtagagactgtcaa
gaacttgagccttctgttggcgagcagttggcatcattgctctacctcgaacccgacagt
gatttgatggctgtctcggttgcggctgagcagaagcgtgaagaggagaaagctaaggga
gtaaaccttgataatggaagtgacaacccagatattgttccctttgaggacaatgaagaa
gaggaagaagaagaaagtgacgaggaggacgaaagccccgggcagggttttgcaggtcaa
ggtcggggacgaggtagaggtatgatgtggccccctcacatgcctcttgctcgtggtgct
cgtccgttccccggcatgcgagggttccctccaaacatgatgggaagtgatggattctca
tatggtcctgtaaatccagatggtttcccaatgcctgatctctttggcatggcgccccgt
ggctttggaccgtaccctagattctccggtgattttgcaggtccagcctccgggatgatg
ttcccgggccggccgcctgccggtggattcgggatgatgatgggtcccggacggcctccc
tttatgggcggaatgggcgtcggaggcgcagctagaggcagcaggccgggaggtatgccc
cctttttatccgccaccacagcaacaacagccttatcaaaacccgggtcgttcgaaaaga
gatcagaaagcaccatctagcgatcagaacgagagctctgatcaagccaaggggcaagac
attgctggacctaatgatgaagggcggaatcagcaaagggggaaagctcagcaagatgat
cactatagcggtgggaacagctaccggaacgatgagagcgagagtgaagatgaggcccca
aggcggtcgagacacggtgaagggaagaagaagaggcggagcatggagggagatggtacc
gctgtctcagtcgagaacatatag
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