Salvia hispanica (chia): 125194216
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Entry
125194216 CDS
T09851
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125194216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125194216
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125194216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
PBP1_TM
zf-Sec23_Sec24
Motif
Other DBs
NCBI-GeneID:
125194216
NCBI-ProteinID:
XP_047948278
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Position
6:complement(31868899..31874816)
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AA seq
712 aa
AA seq
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MPRKVNYGIDYDDDYEDDYNDDYDYDYDEEVEENGITAKTMPAKEVRTAKVWRCPICTYD
NEDSMSACDICGILRNPLVKSNIQINDVAVGGKCKDSGVSVMAKSLFASLPQHRVQPFIF
EVQDDVSSTDNHLNFHKFRNMRSTFSEFSSAFSNQNHKRVNIAPFKFNVPSPDDLVSSGL
QSLKMKSKDNQRDTNIPVELELSAKDQESTSASVTRQRGNGVNEKDYAPTSGSIQGVPHS
NVNTEAMSSKTGKVEQSIERKTASISDFTPETWMIPETVDGELSQLNLAIVGHVDSGKST
LSGRLLHLSGRISQKLMHKYEKEAKQQGKGSFAYAWALDESAEERERGITMTVGVAFFTS
KKYHIVLLDSPGHRDFVPNMISGATQADAAILVVDASMGSFEAGIDATGGQTREHAQLIR
SFGVDQIIVLVNKMDVVGYSKERFDFVKQKLGTFLRTCGFKESSISWVPASVMENQNLVA
NSSDARLSWYRGPFLMDAIDSLQLPARDYSKPLQIPICDVKSQSQSQVSACGKLETGAIR
PGLKVLVMPSKEIATVRSLERDSQPCSIARAGDNVTVNLQGIEGNRVTAGSVICHPDYPV
QVASQLEMKILVLEISTPIVIGSQLEFHIHHAKEAAKIVKILSLLDPKTGKVTKKSPRCL
LSKQNAMVEVALQGPVCVEEYSSCRALGRVFLRASGRTIGLGVVTQIIKREN
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaagtgaactatggaattgattacgatgatgattatgaagatgactataat
gatgactatgattatgattatgatgaagaggttgaagaaaatggtatcacagctaagacg
atgcctgcaaaagaagtcaggacggctaaggtctggcgatgcccaatttgtacttacgat
aatgaagatagtatgtctgcatgtgatatatgtgggatcttacgtaaccctttggtcaag
agcaatatccaaatcaatgatgttgcagtgggcggcaaatgcaaagattctggagtatct
gtgatggccaagtctctttttgcatcattgccgcaacatagagtccaaccattcatcttt
gaagtgcaggatgatgtttcttccacagataaccaccttaacttccacaaattcagaaat
atgcgcagcactttttcggaattcagtagtgcttttagtaatcaaaatcataaaagagtt
aatatagcccctttcaagtttaatgttccttctccggatgatttggtgtcaagtggactg
caatcactgaaaatgaaatccaaagataatcagagggacacaaatattccagttgaactg
gagttgtctgctaaggatcaagagtccacttcagcatcagtaacaagacagagaggtaat
ggagttaatgagaaagattatgctccaaccagtggaagcatacaaggggtgcctcatagc
aatgtgaatactgaggctatgtcttccaaaactggaaaagtagaacagtctattgagaga
aaaacagcatcaatttctgacttcactcctgagacatggatgatcccggaaacagttgat
ggtgaactgagccagctaaatcttgcgattgttggccatgttgattctgggaagtcaaca
ctttcaggacggttgcttcatttatcgggacggatatcacagaaattgatgcacaaatat
gaaaaagaagctaaacaacagggaaaaggatcttttgcttatgcatgggcattagatgaa
agtgctgaagaaagggaaaggggtataacaatgacagtgggcgttgctttcttcacttcc
aaaaaatatcacattgtgctgcttgattcccctggacatagagattttgttccaaacatg
atctcaggagcaacacaagcagatgctgcaattttagttgttgatgcttcaatgggttca
tttgaagctggcatagatgctactggggggcaaacgagggaacatgcacagctgattaga
agcttcggagttgatcagattattgttcttgtcaacaaaatggatgtggtgggatactca
aaggaaagatttgattttgtgaagcagaaactagggacatttctccgcacttgtggtttt
aaagaatcttctatttcatgggttccagcaagtgtcatggaaaatcagaacttagttgca
aactcttctgatgcacggctgtcgtggtatagaggaccttttttgatggatgcaatagat
tctctgcaacttcctgcaagagattactccaaaccactacaaattcctatatgtgatgtt
aagtcacaatcccaaagtcaggtgtcggcatgtgggaaactggaaactggagctattaga
ccaggacttaaggtattggttatgccttcaaaagaaatagccacagttcgctcgttggaa
cgtgactctcagccatgtagtattgcaagagctggtgacaacgtaacagtgaatttgcaa
ggcattgagggcaatcgtgtaacagccggaagtgtgatatgtcaccctgactaccctgtt
caagttgccagccagttggaaatgaagattctggtccttgaaatttcaactccgattgtt
attggttctcagttggagtttcacatacaccacgcaaaagaggctgcaaaaattgtgaag
atattgtctctgcttgatccaaagacaggaaaagtaacaaagaagtccccaagatgcttg
ttgtccaagcagaatgccatggttgaggtggctttgcaaggtccggtatgtgtagaggag
tacagcagctgcagagctctgggaagagtgttccttagagcttcaggaaggactattggt
cttggtgttgtgactcaaatcattaagagagaaaactag
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