Salvia hispanica (chia): 125194292
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Entry
125194292 CDS
T09851
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03420
Nucleotide excision repair
shis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125194292
09124 Replication and repair
03420 Nucleotide excision repair
125194292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125194292
03400 DNA repair and recombination proteins [BR:
shis03400
]
125194292
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
125194292
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125194292
TCR (transcription coupled repair) factors
Cul4-CSA complex
125194292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
125194292
NCBI-ProteinID:
XP_047948391
LinkDB
All DBs
Position
6:44787623..44795254
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG
RIATLELFRPHGETQDLLFIATERYKFCVLQWDAETGEVITRAMGDVSDRIGRPTDNGQI
GIVDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL
YQDNKDARHMKTYEVNLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYS
SASSFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVSGLKIELLGET
SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPHDTFLVVS
FINETRILAMNIEDELEETEIEGFCSNVQTLFCHDAAYDQLVQVTSSTVRLVSATSRELR
NEWFAPEGYSINVATANVTQVLLATGGGHLIYLEIGDGVLREVKHTQLEYDISCLDINPI
GDDKNCSQLAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFVLTTSNGALSDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSYMCPFNTAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQTRTFAICSLKYNQSAADDSEMHFVRLLDDQTFDFISTYPLDQFECGCSVLSCSFSDD
NNVYYCVGTAYVMPEENEPTKGRVLIFTVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMPRDDGSHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQMNMRKV
IKGVGGLSHEQWRSFYNEKKTVEAKSFLDGDLIESFLDLNRNRMEEISKSMNVAVDELMK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatggaattacgtggtgacggcgcacaagcccaccaacgtcacgcattcgtgc
gtcggcaatttcactagcccgcaggagctcaatctcatcattgcgaaatgcactcggatt
gagattcatttgctctcgcctcaaggcttgcagcctatgctggatgtgccgatatatggg
agaatcgccacacttgagctttttcgcccacacggagaaacacaagatctccttttcata
gctacagaaagatacaaattctgcgttttgcaatgggacgctgagactggcgaggttatc
acaagagccatgggcgatgtttctgatcggattggccgtcccacagataatggacagatt
ggaatagttgatccggactgcaggttgattggtctacatctatatgatgggttgttcaag
gtcattccatttgataacaaaggccaactcaaagaggcatttaatatcaggcttgaggag
cttcaggttttagatatcaagtttttgtatggttgccctaagccgaccattgttgtactt
taccaggataacaaggatgcgcgtcatatgaaaacatacgaggttaatttgaaggataaa
gattttgttgaaggtccgtggtcgcaaaacaatcttgacaatggggcagatttgttaatc
ccagtgccacctcctctttgtggtgtcctcattattggtgaagaaacaatcgtgtattcc
agtgcctcaagtttcaaagcaatcccgattagaccttctattacaagagcctatggaagg
gttgatgcagatggttcacgctacttattaggagatcacaatgggcttttgcatctactt
gttataactcatgagaaggagaaagtatctggactcaaaattgagctcttgggggaaact
tctattgcatcatccatatcatatcttgataatgctgttgtttttgttggctcaagttat
ggagattcacagcttataaagcttaatcttcaaccggacgcaaaaggttcttatgtggaa
gttcttgaaagatatgtgaatttggggccaattgttgatttctgtgtggttgacttggag
aggcaagggcaaggtcaagttgtaacttgctcaggtgcctacaaggatggttctttgcgc
attgtgcgaaatggtattggaataaatgaacaggcatcagtagagcttcaaggcatcaag
ggcatgtggtcgctgcgatcagctactgatgatccacatgatactttcttagtcgtcagc
tttatcaacgagacacgtattttggcaatgaacattgaagatgaattagaggaaactgag
attgaaggtttttgttccaatgtacagactttgttttgtcatgatgctgcatacgatcaa
cttgtgcaggttacttcaagtacagtgagactagtcagtgctaccagcagagagcttcgc
aatgaatggtttgctccggaaggttattcaatcaatgttgccaccgccaatgtcactcaa
gttctattggctactggcggaggacatttaatttatctagaaattggtgacggtgttctg
agagaagtgaaacatacccagttggagtatgacatctcatgcctggacattaatccaatt
ggtgatgacaaaaactgcagtcaactagctgcggtgggaatgtggacagatattagtgtt
aggatattttcacttccagacttgaaccttataacaaaggagcatttgggaggggagatc
attcctcgttctgtacttctttgtgcttttgaagggatatcttatctgttatgtgctctt
ggggatggacatctcttgaattttgtgttgactaccagcaacggtgcactatcagacagg
aagaaagtttctttagggacccaaccaattacactacgtactttctcatcaaagaatgcc
acacatgtatttgcggcttctgatagaccgactgtcatctatagcagtaacaagaaattg
ctttacagcaatgtaaatctgaaagaagtcagttatatgtgccccttcaatacagctgct
ttccccgacagccttgctattgctaaagaaggcgaactaacaattggaaccatagatgat
attcaaaagcttcacatacgctcgatcccacttggggagcatgcacggcgtatatgtcat
caggaacaaacacggacttttgccatttgtagtttgaaatataaccaatcagcagcagat
gactctgaaatgcactttgtccgcttgttagatgaccagacattcgatttcatatctact
tatccgctggatcaattcgagtgtggttgttccgtccttagctgctcgttctctgatgac
aataatgtgtactactgtgtggggactgcatacgtaatgccagaagaaaatgaacctact
aagggtcgggttttaatttttactgtagaagatggaaaactccaactaattgctgagaag
gaaaccaaaggtgctgtttattctcttaatgccttcaatgggaaactgcttgctgccatt
aatcaaaagattcagttgtacaagtggatgccacgagatgatggctctcacgagttgcaa
tccgaatgtggacatcacggccacatacttgccctttatgttcagactaggggggatttc
atcgtagttggtgatctgatgaaatcaatatctttgctgatttacaagcatgaggagggt
gctatcgaggagcgagctcgtgactacaacgcaaattggatgtcagctgttgagattctg
gacgacgatatttaccttggagctgagaataatttcaacctcttcaccgttcgtaaaaac
agtgaaggagcaactgacgaggagcgtgggcgcctcgaggtcgttggcgaataccacctt
ggcgaattcgtcaatcgattccgacatggttcactagtcatgcggctgccagattccgac
gtcggccagatcccaacggtcatatttggcactgtcaacggagtcatcggggtcattgcc
tccctcccccacgagcagtacgtcttcctggagaagctgcagatgaatatgaggaaagtg
atcaagggcgtcggggggctcagccacgagcagtggagatccttctacaatgagaagaaa
accgttgaggcaaaaagcttcctagatggagatctgatcgaatcgttccttgatctcaac
aggaataggatggaggagatttcgaagtcgatgaatgttgctgtggatgaacttatgaag
agagtggaagagctgactaggttgcattaa
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