Salvia hispanica (chia): 125194499
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Entry
125194499 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125194499
09122 Translation
03013 Nucleocytoplasmic transport
125194499
03015 mRNA surveillance pathway
125194499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125194499
03041 Spliceosome [BR:
shis03041
]
125194499
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125194499
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125194499
Spliceosome [BR:
shis03041
]
Complex C
Other components
EJC/TREX
125194499
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125194499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
125194499
NCBI-ProteinID:
XP_047948708
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All DBs
Position
6:37695374..37699581
Genome browser
AA seq
443 aa
AA seq
DB search
MGDAKDNEAYEEELLDYEEEEEKAPDSVIAKVNGESGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMVCLIEAYTISVCCAVPS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgccaaagacaacgaagcttacgaagaggaactcctcgactacgaggaagaa
gaagaaaaagcccccgattctgtcatcgcaaaagtcaacggagagtccggcaagaaaggc
tatgtggggatccatagttcaggatttagagacttcctcttgaagccagagctcttgagg
gctattgttgattcaggatttgaacatccttcagaagttcaacacgagtgcatacctcaa
gccattttgggaatggatgtcatctgccaagccaagtctggcatggggaaaactgctgtc
tttgttctttcgacattgcagcagattgaacccgttgcaggtcaagttgctgcacttgtg
ctatgccacacaagggaactggcttatcagatctgtcatgaatttgagcggttcagcacc
tatttgccagatattaaagttgctgttttctatgggggagtcaatgttaagattcacaaa
gatcttctgaagaatgaatgccctcacattgtggtaggaacaccaggaaggatacttggt
ctagcaagagacaaggacctttctttaaggaatgtgaggcatttcatccttgatgaatgc
gacaagatgcttgagtctcttgatatgagaagagatgtgcaggagattttcaagatgaca
ccgcatgacaagcaagttatgatgttttcagctacactcagtaaagaaattcgacctgtt
tgcaaaaagttcatgcaagatcctatggagatttacgtggatgatgaggcgaagttaacc
cttcatggtcttgtacagcactacatcaaactgagtgagctggagaagaaccggaagctg
aatgatctgctggatgcattggacttcaatcaagttgttatcttcgtcaaaagtgtcact
agagctgctgagctgaacaagttgcttgtggagtgtaactttccatcgatttgcattcac
tctggcatgtcgcaagaagaaagattgacccgttacaagggattcaaggagggacataag
aggattcttgtagcaactgatttggtaggaagaggaattgatatagagcgagttaatatt
gtgatcaactatgatatgccagattcagcagatacttatcttcaccgggtgggtagagct
gggaggtttggcaccaaagggctggccatcacgtttgtttcttctgcctctgattcagat
gttctaaatcaggtacaggagaggtttgaagttgatattaaagaactacctgaacagatt
gatacttccacatatatggtctgtttaattgaagcttacactatcagtgtctgttgtgca
gtgccatcgtaa
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