Salvia hispanica (chia): 125194887
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Entry
125194887 CDS
T09851
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
shis03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125194887
03460 Fanconi anemia pathway
125194887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125194887
03036 Chromosome and associated proteins [BR:
shis03036
]
125194887
03400 DNA repair and recombination proteins [BR:
shis03400
]
125194887
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125194887
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
125194887
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
125194887
FA (Fanconi anemia) pathway
Downstream FA components
125194887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
PerC
Motif
Other DBs
NCBI-GeneID:
125194887
NCBI-ProteinID:
XP_047949061
LinkDB
All DBs
Position
6:complement(13174434..13180636)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSTWRIFPDDRNDFRWENAVQQLRLEEFSPAVAEDSRRFPSMADLLLLGSSKLLENRKSN
VEEEQPTFRTGLGKSVEVKHSSIARARSVLGDLDYTLIDSGHLDGREKVSASFTQISNMN
SMESAVMSKSVFHSASENDVHMKNSMFQTGLGKTVSISSAGLLRAKTLLGLDGNCDQEQR
QKQSISSELLSSANPSHLDTQKLSKLNFSSSTKAGAYPRVKSSTHPNESMNFPECMTAAA
SELPQVKFQTAGGRSISVSSDALQRAKNLLGNLEVDSFLNEASTANPLFSVIDGKPSCLS
NKKDDFTSPFLHHQAIENGGQPLRNFSSSPSSSSYKRNSFGKSERLQPGNNLIAQFDAEA
AGNSCKRHYNGFTGERKPPKKKSCSNMDGLEFAILPKSDPSKGSSNTALVDISNTMNIDN
KQYSVEKKRLRGISSVSPFKKPRSSFVTPLKKTNLSDTNVLSRPAPKESPCKQRVSLRYP
SQRLRVYLKEYFSQPPLQEKLGNLPEYVKSMNPVAAESFTIRNETSSECIGPEAFYTMLL
QSGASIQHMTKEWVTNHYKWIIWKLTSYERSYAEKFSGKLLTVSSVLEELLYRYEREVNH
GHRSLIKKMLDGDVPPSSMMVLCVSSVCEDHDPQCGNQSVPQEGGYVNASRIELTDGWYA
VKALLDEQLSQKLASKKLFLGQKIRIWGAKLCGWLGPVSPFQASSTTSLLLHINGTYRCH
WAERLGLCKRAGDPLAFRCIKGNGGVVPSTLVRVTRTYPVLYRERLSNGSFVVRSERLEA
KALQSFNQRRDLVAEGIMSSFQRETEFDVGDDHELEEGAKLMKLLETAAEPEVLMAGMSS
KELAAFASYKAKLQAMRLSEIQKAIEKAVQDAGLGERETTPFLRLKVVGLMKKGQQECSP
LKGLVTIWNPTQKQTMELQEGQAYAVGGLVPSSSDSGILYLQTRGSTSDWLPLSHRIIEQ
FESFFVPRSSTTISCLGRVPLSSEFDMVALVVYVGEVYRQGHQQRQWVFVTDESAAELFL
EGSPDVLLAINFCLPYVEFDSSVPMNSSVAGSVVGFSNLTKRPRDQVNGLWVAEATENSD
YFLSYDNGVRRHLKDAAASVAKWATPPNPIIEKLKERVLSIIRKSKT
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcggatatttcccgacgatcgaaacgatttccgatgggaaaacgccgtt
caacagctccgattggaagaattctctcccgctgtggctgaagactctcgtcgctttcct
tccatggcggatctattgcttctaggttcttcgaagttattggagaataggaagagcaat
gtggaggaggagcagccgactttccgaacggggttggggaaatctgtggaggtgaagcac
tcgtcaatcgccagagcacgttctgttcttggtgacctggattacacgttgattgattct
ggccacttggatgggagagaaaaggtatctgcttcatttacacaaatatctaacatgaac
tcgatggaatcagctgttatgtcaaagtctgtgtttcatagtgcatcagaaaatgatgtt
catatgaaaaattccatgtttcagacgggattaggaaaaacagtcagtatatcgtccgct
ggcttacttagggcaaaaactctgttaggcctagatggaaattgtgatcaagaacagaga
cagaaacaatcaatttcttctgagctcctttcttcagccaatccatctcatttggacacc
cagaaactgagtaaattgaatttcagtagttccaccaaggcgggggcatatcctagagtg
aagtctagtactcatccaaatgaatccatgaattttccggaatgcatgactgctgctgct
tctgaacttccacaagtcaaatttcaaactgctgggggaagatccatatcagtttccagt
gatgcattgcaacgagctaaaaacttgctaggaaaccttgaggttgattcatttttaaat
gaagcaagcacagccaatccactgttctcagtaattgatggaaaaccaagttgtttatct
aataaaaaagatgactttacttcaccgtttctacaccaccaagcaatagaaaatggtggt
cagcccttgagaaatttttcatcctcccctagttcaagttcgtacaagagaaactcattt
ggtaagtctgagaggctacaaccaggaaataacttgattgcacagtttgatgcggaggca
gcaggcaactcttgtaaaaggcattataatggatttactggagagagaaagccccctaag
aaaaaatcatgctcaaacatggatggtttggaatttgcaattctgccaaagagtgatccc
tcaaaggggtcatccaatacagctttggtggatatatcaaatactatgaatatagataat
aagcaatattctgtagagaagaaaagacttcgagggattagttctgtttctccattcaag
aagcctcgcagttcatttgtcaccccgttaaagaaaactaacttgtcagatactaatgtt
ttgtctaggccggcaccaaaagagtccccgtgcaaacaaagggtttccttgagataccct
tctcagcgtctgcgggtttatcttaaagaatacttttcacagcctccactgcaagaaaag
ttgggtaacttgccagaatatgtgaagagtatgaacccagttgctgctgaaagttttaca
atacggaatgaaacatcttcagaatgtattgggcctgaggctttctacacaatgctattg
cagtcaggagcttctatccaacacatgaccaaagagtgggtcacaaatcactataagtgg
atcatatggaaattgacctcctatgaaagaagctatgctgaaaagttttctggaaaactg
ttgaccgtctctagtgtgcttgaggaattactgtacaggtatgaaagagaagtaaatcac
ggacatagatccttaatcaaaaaaatgttagatggtgatgtaccaccttcttcaatgatg
gtactttgcgtttcctctgtctgtgaagatcacgacccacagtgtggaaatcagtctgtt
ccccaggaaggtggctatgttaatgcgtcaagaatagagttgactgatggatggtatgct
gtgaaagctctgttggatgaacagctatcccagaaacttgcttcaaagaaattgtttctg
ggccagaagatcaggatatggggagccaaactgtgtgggtggcttgggcctgtttcaccc
tttcaggcatcatcgactacaagtttgttattgcacataaatggtacttacagatgtcat
tgggctgaaagattaggactatgcaagcgtgctggtgatccattggcattcagatgcatc
aaggggaatggaggggtggtccccagcactttggtgagggtcacaaggacctatccagtt
ctttatagggagaggttgagtaatggaagttttgtcgtgaggtctgagaggttggaggct
aaagctctgcagtcattcaaccagaggcgtgatcttgttgctgaaggaatcatgtcctcg
tttcaaagggaaacagaatttgatgttggggatgaccatgaacttgaagagggggccaaa
cttatgaagttacttgaaactgctgctgagccagaggttctcatggctgggatgagctca
aaagaactagctgcttttgcttcttacaaagctaagctgcaggcaatgaggctgtcagaa
atccaaaaagcgattgagaaagctgtgcaggatgctgggcttggggagagagagaccact
ccatttttgcgtcttaaagtggtcggtttgatgaaaaagggtcaacaagagtgcagtcca
ctgaaaggcttggttactatatggaatccaactcagaaacagacaatggagctgcaagaa
gggcaggcatatgctgttggaggtcttgtaccatctagctccgattcaggcatcctttac
ctacaaacaagagggtcaactagtgattggttaccattgtcccacaggataattgaacaa
tttgagtcatttttcgtcccacgttcatcaactacaatatcatgtttgggaagagttcct
ctctccagtgagtttgacatggtggctctcgttgtgtatgtgggagaggtgtatagacaa
ggtcaccagcaaaggcagtgggtatttgtgaccgatgaatctgcagctgagcttttcttg
gagggatcaccagatgtactactggccatcaacttttgcttaccctacgttgaatttgat
tcatctgtgccaatgaactccagtgttgctggatccgtggtgggattctctaatctcacg
aagagaccaagagatcaagtaaatggcttgtgggttgctgaagctacagaaaattcagat
tattttcttagttacgataatggagttcgcaggcatctaaaagatgctgctgcctcagtc
gcaaagtgggcaactcccccgaacccgataatcgagaagctcaaggaaagagttctttcc
ataatcagaaaatccaaaacttag
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integrated database retrieval system
