Salvia hispanica (chia): 125195236
Help
Entry
125195236 CDS
T09851
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125195236
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125195236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
TetR_C_1
Motif
Other DBs
NCBI-GeneID:
125195236
NCBI-ProteinID:
XP_047949373
LinkDB
All DBs
Position
6:36485623..36487689
Genome browser
AA seq
396 aa
AA seq
DB search
MAKHTTSLFILTWLLAYCISKNIAHSSHKTQNKTSPHYNIHTYPRQSDKVMNTIDSCWRA
DPNWALTRKALADCAIGFGSGAVGGKNGAIYIVTDASDDAINPKPGTLRYGAIQAQPLWI
IFESDMSIKLDNELIVNSYKTIDGRGARVEISNGPCITIEHVSHVIVHGLSIHDCKPGKP
GLVRSSTDHVGHRLGSDGDGITILDSSNVWIDHCYLARCTDGLLDVTHASNFVTLSNNYF
TQHDKVMLLGHKDGFTDDKIMKVTVVFNHFGPGLVQRMPRVRYGYAHVANNRYDQWIMYA
IGGSADPTILSEGNYFVASDQVKEVTKRETKDHWKSWKWRSTKDVFVNGAYFIPSGYGSV
APNYLASQHFEAAVGSMVPALTSDAGPLFCEPHQQC
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacacaccacttcccttttcatacttacatggctacttgcctattgcatttcg
aaaaatatcgcacattcatctcacaaaactcaaaataaaacatccccacattataacatc
catacatatcctcgccaaagcgacaaggtgatgaacacaatcgactcgtgctggcgggct
gacccgaattgggccctaacccggaaggcgctagccgattgtgcaataggattcggaagt
ggggccgtgggagggaagaacggggctatatacatcgtgactgacgcatcagatgacgca
attaaccctaagccgggcactcttcgttatggtgcgatccaagcccagccgctatggatc
atatttgaaagcgacatgagtattaaactcgataacgagttgattgtgaatagttataag
acgatcgatggtagaggggcgcgagtagagatatcaaatgggccgtgcattactattgag
catgtgagccacgtcatagtccatgggcttagcatccacgactgcaagcccgggaagccc
ggcctggtgcggagtagcacggaccatgtcgggcacaggctcggtagcgatggagatgga
attaccattcttgattcgtccaatgtgtggattgatcattgctaccttgctcgttgcacg
gatggtcttcttgacgtgacacatgcatcaaattttgttactctttccaacaattacttc
actcaacatgataaggtgatgctgttgggacataaagatggatttacagatgacaaaatc
atgaaagtgacggtggtttttaatcactttgggccaggattggtgcaacgaatgccaaga
gttcgatacggatacgcccacgtcgccaacaataggtacgatcagtggattatgtacgca
attggtgggagtgctgatcccactatacttagcgaaggcaattattttgtggcttccgat
caagttaaagaggtaacaaaacgcgagacgaaggatcattggaagagctggaagtggagg
tcgacgaaggacgtgttcgtaaatggggcatattttatcccatcaggatatggaagtgtt
gctccaaattatttggcatcgcaacactttgaagccgcagtcggatcaatggttccagct
ttaacatccgatgctggtcccctcttttgtgaacctcaccaacaatgttga
DBGET
integrated database retrieval system
