Salvia hispanica (chia): 125195692
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Entry
125195692 CDS
T09851
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
shis
Salvia hispanica (chia)
Pathway
shis03030
DNA replication
shis03410
Base excision repair
shis03420
Nucleotide excision repair
shis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125195692
03410 Base excision repair
125195692
03420 Nucleotide excision repair
125195692
03430 Mismatch repair
125195692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shis03032
]
125195692
03036 Chromosome and associated proteins [BR:
shis03036
]
125195692
03400 DNA repair and recombination proteins [BR:
shis03400
]
125195692
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125195692
DNA Replication Termination Factors
ELG1-RFC complex
125195692
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
125195692
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125195692
Check point factors
HRAD17(Rad24)-RFC complex
125195692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_16
TIP49
AAA_5
RuvB_N
Rad17
Motif
Other DBs
NCBI-GeneID:
125195692
NCBI-ProteinID:
XP_047949814
LinkDB
All DBs
Position
1:37044461..37047264
Genome browser
AA seq
647 aa
AA seq
DB search
MEVSMRPNRIRSGYEPSDTENEHEYEHEHEYNNGIAYDHIRSRSPLPTSTPSPARRRHSK
SPYRPRTNADLPRRTYSDLRMSVSQRRHANGNEDCPFSQSERRTNNIHRNESPFSASERR
RYASPLKDDASLGRKERSSGYSRRAASAPRSRLRPRSKEMNMEDQKLPSVGEINEMVANA
NMRSNGGGVNLDSMDSIFFSRAANQPSALPKPPGRSSASSTNRNSNWSSLMSRQSSNISD
TSGRTSGSTARFVASRRKNQSETTWFLCIKKGSCKTSNKSPVKERPFNEASFISKAVVVE
SLRPLWADKHQPLTLTGFACHKNEAQLLLQLANSEMFPHILLKGPPGTGKKALTLALLRE
LYGDPVWNESRPIQVVVPVSSSPHHVELNVYTESKAAYALTALVKQISSEYAVIPEISVA
PNKAHYKVLVLYDVDKAAENIQHLIKWIMDCYSDCCKLILCCEDDTDVLDSVKSRCKIIN
IEPSTTHQVMEVLIQIAKKEGFELSTGFASKIANKSKQNLRRAIMALEACKLHNYPFADD
QHIPVAWEEAVVELAADILADPSPKRLLTVRGKIQKILADFVHPKLVLLKLVEQLLRGVD
ASLKREIYYWYAYYDKRLPSGASALLKLEEFVAKFMSIYRKSSNNRR
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtcaatgcgccccaaccgaattagaagcggttacgagccatccgacacggaa
aacgagcacgagtacgaacacgaacacgagtacaacaatggcatcgcgtacgaccatata
cgcagcagaagccctctgcctacctccactccgagccctgctcggagaaggcacagcaag
tccccttaccgaccgcgcaccaacgctgatctcccgcgcagaacctactctgatctccgc
atgtccgtctcccaacgcaggcacgccaacgggaacgaagactgccccttctcgcaatcc
gagcgcaggactaataatatccaccgcaacgagagcccattctcagcatccgagcggagg
agatacgcttctcctttaaaggacgacgcgagtctagggcggaaggagcggtctagtggc
tacagcagaagggccgcatccgctccccggtcgaggctgaggccgagaagcaaggagatg
aacatggaagaccagaagctgccttctgttggagagatcaatgaaatggtcgccaatgct
aacatgaggtccaatggaggaggagttaacttagacagcatggactccatcttcttttcc
cgcgcagcgaatcagccgtctgctctgcctaagccgcccggtagaagctctgcctcttcc
actaatcggaattctaactggagctctcttatgagcaggcagagtagtaacataagtgac
acaagcgggcggacgagtggcagcactgccagattcgtggcgagcagaaggaagaatcag
tcagaaacgacatggtttctgtgcatcaagaagggctcttgcaagacctctaacaaatcg
ccggtgaaggagaggccattcaacgaggcttcttttattagtaaggcggtcgtggttgag
agcttgaggccgctctgggctgataagcatcagcctcttaccttgaccggattcgcttgc
cacaagaatgaagctcagcttcttctccagctcgcgaacagtgaaatgtttccgcatatt
ttgctcaaaggtccgcccggtactggtaagaaggctctcacgttggctcttctccgcgag
ctatatggtgatcctgtttggaatgaatcgaggccgatccaagtagtcgtccctgtaagt
tcgagtcctcaccatgtggaactcaatgtctacacagagtccaaagccgcatatgcactg
acagctctagtgaagcaaatcagtagcgagtatgccgtcattcctgaaatcagtgtagct
cctaacaaggcacattacaaagtattggttctatatgatgttgacaaggctgcagagaac
atacaacatctcataaaatggatcatggactgttactcggattgttgcaaacttatcctt
tgctgcgaggacgacacagacgtcctcgactctgtcaagagccgctgcaaaatcatcaat
atcgaaccctccacaactcatcaagtaatggaggtcctcatccagattgccaagaaggaa
ggttttgaactatccacaggttttgcttcaaagattgcaaacaaatcaaagcaaaatttg
aggagagcaatcatggcacttgaagcatgcaaattgcacaactatccttttgcagatgac
caacacatacccgttgcgtgggaagaggccgttgtggaacttgctgccgacattttggca
gatccttctccaaagaggttattgactgtgagaggaaagattcaaaaaattctggcagat
tttgtccatccaaaactagtactcctgaaactcgttgaacaactcctccgaggagtcgat
gccagtttgaaaagggaaatatactattggtatgcatactatgataagagactccctagt
ggagcaagtgctttactcaagttagaagaatttgtggcaaagtttatgagcatatacagg
aagagttccaacaatcggcgttag
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