Salvia hispanica (chia): 125195766
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Entry
125195766 CDS
T09851
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125195766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125195766
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125195766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
Beta-prop_HPS5
WD_LRWD1
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_DCAF12
ATPgrasp_ST
WDR54
Motif
Other DBs
NCBI-GeneID:
125195766
NCBI-ProteinID:
XP_047949941
LinkDB
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Position
6:18060836..18071363
Genome browser
AA seq
753 aa
AA seq
DB search
MYGGDPQHHHQQHQRPPPGPPLPPPMQQQQQHPNPHQFMHQQPPHEFQRGPHPPQGPPPP
QIMRQPSASSTTLNPPPPEFHQQQHQHQQQQQHHHHPNTQPPFSGMQQPYDAHADFLAAK
RMRKIGQRRAVDYTSTVVRYMQIRMFQRDSKDRTVLQPTPAAAIDMLPTVAYLDNPSTSF
AAKFVHTSLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHEQAVRS
MIWSYNENWMVTGDDGGAIKYWQNNMNNVKANKSAHKESVRGLSFCRTDLKFCSCSDDTT
VKVWDFARCQEERSLTGHGWDVKCVDWHPTKSLLVSGGKDNLVKLWDAKSGKELSSFHGH
KNTVLCCKWNQNGNWVLTASKDQIIKLYDIRAMKELEAFRGHRKDVTALAWHPFHEEYFV
SGSFDGSIFHWLVGHDTPQVEIQNAHDNSVWDLAWHPIGYLLCSGGNDHATKFWCRNRPG
DTARDKFNTGQNQGFAEQNNIMGGRVPVPFQVAEPPTTPGPFGSGLARNEGTIPGIGAAM
PLLDSSAQGDQQPPMSAPPLPPGPHPSLLAGKQQPPYQQNAPSVQQHQPQHMSPMSMPPQ
NMSQMQPPSHLPLLPHPHLSRPPPQLQPLNTSAGAPSSMPGSMPIPSMPGPMGMHGGMNQ
MVPQMPQGHFMQMNPMPSGSGPPGNMPPGGNQMFQPGGPFNRPQAGQMPMMPGINPYQSG
NPNGPGMTSNYNLPSGMPPPLPPGPPPHGQAHQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcggtgatcctcagcaccaccaccagcagcaccaacgccccccgccggggcct
ccattgccaccgccgatgcagcagcagcagcagcacccaaatccccaccaattcatgcac
caacagccgccgcatgagtttcagaggggcccacaccccccgcagggtccaccgccgccg
caaattatgcgccagccctctgcttcatccaccactctcaaccctcccccgcctgaattt
catcaacagcagcaccagcatcagcagcagcagcagcaccaccaccacccaaacactcag
cctcctttctccgggatgcagcagccttacgatgctcatgctgactttttagctgcaaaa
agaatgcggaaaattggacagcgacgagcagttgactatacgagcactgtcgtacgttat
atgcagattcgcatgttccagcgggattcaaaggacaggacagtattgcaacccaccccc
gcagcggctattgatatgttgcctactgttgcctacttagataatccatccactagtttt
gcagcaaagtttgtacatacatcattgaacaaaaacagatgttcaatcaatagagttttg
tggactcctagtgggaggcgtcttattactggatctcaaagcggggagttcactctgtgg
aatggccaatccttcaattttgaaatgatactgcaggctcatgaacaagcagtcagatct
atgatatggagttataatgagaactggatggtcaccggtgatgatggtggtgctataaag
tactggcaaaataacatgaataatgtgaaagctaataaatctgcccataaagaatcagtc
cgtggcttaagtttctgtaggacagatttaaagttttgttcctgttcagacgacactaca
gttaaagtttgggacttcgctaggtgccaagaggaacgctcgttgaccggccatggctgg
gatgtaaagtgtgttgactggcatcctactaagtcgttattggtttctggtgggaaagac
aaccttgtcaaactctgggatgctaagtccggaaaagagctctcgtcatttcatgggcac
aaaaatactgtactttgttgtaaatggaatcaaaatggtaactgggttttaacggcttca
aaggatcaaattattaagctttatgatatacgggctatgaaggagcttgaagcatttcgt
gggcatcgtaaggatgtcactgcattagcttggcatccatttcatgaggaatattttgtt
agtggtagttttgacggatcaatattccattggcttgttgggcatgatactccccaggtt
gagatacagaatgctcatgataacagtgtttgggaccttgcttggcatcctataggatac
cttctttgcagtggtggcaatgatcacgcaacaaaattttggtgcagaaatagacctggg
gatacagctcgtgacaagtttaacacaggacaaaatcaaggctttgctgagcagaacaat
attatgggcggccgtgtgcctgtcccgtttcaggtggctgaaccccctactacacctgga
ccatttgggtctgggttggctcggaatgaaggaacgattccagggattggagctgctatg
cctctactagattcatctgctcaaggagatcagcagccacctatgtcagcaccacctctt
ccacctggtccacatccatctcttctggcaggcaaacaacaaccgccttatcaacaaaat
gctccatcagtccaacagcaccaaccccagcacatgtcccccatgtcaatgccaccacaa
aatatgtctcagatgcaacctccttcgcatctgcctttgttgccacatcctcatttatct
cgtcctccaccccagctacaaccgcttaatacatctgccggagcaccttcttcaatgcca
ggatctatgcctatcccttcaatgcctggtccaatggggatgcatggtggtatgaatcaa
atggttcctcaaatgccccaaggacactttatgcaaatgaatcccatgccttctggatct
ggtcctcctggaaatatgcctccaggtggtaaccaaatgttccaaccagggggacccttt
aacaggccccaagctgggcagatgccgatgatgccgggaattaacccttaccagtctgga
aatccaaatggccctggaatgacatcaaattacaatcttccgtctgggatgcctccacca
ctacctcccggcccgcctccacacggccaagcgcatcaatag
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