Salvia hispanica (chia): 125196022
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Entry
125196022 CDS
T09851
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125196022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125196022
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125196022
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125196022
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Phage_TTP_11
Motif
Other DBs
NCBI-GeneID:
125196022
NCBI-ProteinID:
XP_047950325
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Position
6:complement(399246..405958)
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AA seq
557 aa
AA seq
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MSGVLSSGLNGSNSNIPDNAGRAFATSFSAQSGSSGAALNQSGAGNLQGLHNIHNSFSMS
NMPGPYASRNSGNIGGLPNGVQQAPGSVSNGRYGINSLPNAISQLSLGSSHGHSGLNNTG
GPGVLPNMGNSGRIANTIGGLVGGGNASRGSSSTGVGNIPGLASRLNLTAPQVVSMLGNS
YSGAGVPLSQNQFQAGNNSFSFMALLNESNAHDNATFDVNDFPQLSGRPPSAGGSHGQIG
MMQKHNIGFGQQNQEFSIQNEDFPALPGYKGGLNVGGSAEYTMNAHQKEQIHDNMTNLMQ
QSQQLSMGRSSGFNFGGSYSSHHPQQHRASSINGSGVSYLTSGNSDLHFHGPEYQQFQQS
QSRFINPFRDKDIKATPGSQSALDQYGIVGLLSVIKMVKPALSTLALGLDLTTLGLNLNS
SESLNKKFASPWSDEPVRGEPEFSVPECYYTKQTPPLKQTYFARFRPETLFYIFYSMPKD
EAQLFAANELYNRGWFYHKDLRLWFTRVKNMEPLVKTNSYERGCYFCFDPNLWQTARKDN
FVLQYEMVEKRPVLPQQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggtactaagttctggtttgaatggatcgaattcaaatattccggataatgct
ggaagagcttttgcaacttccttttctgcgcaatcaggttcatctggagctgccttaaac
cagtccggtgcaggtaatcttcaggggcttcacaatatccataatagttttagcatgtca
aacatgcccgggccttatgcatcaagaaattcgggaaatattggtggtcttccaaatggt
gttcaacaagctccaggaagcgtgtctaatgggagatatgggataaatagtctccctaat
gcaatttctcagctgtctttgggaagttcacatggacattcaggtcttaataatacaggg
ggcccaggtgtacttccaaatatgggaaattcaggaagaattgcaaatactattggtggt
cttgtgggcgggggcaatgcttcaagggggtcaagctctacgggcgttggaaacatccct
ggtctggcttctcgtttgaatctgacagctccgcaggtggtatccatgctgggaaattct
tattctggtgctggtgtgccactttcacaaaaccaatttcaagctgggaataatagtttt
agttttatggcattactaaatgagtcaaatgcccacgacaatgctacttttgatgtaaat
gattttcctcagctatcagggcgtcccccgtcagctggtggctctcatggtcaaataggt
atgatgcaaaagcataacatcggttttggtcaacagaaccaagaattcagcatccaaaat
gaagatttccctgctttaccgggatacaaaggcggtcttaatgttggtggtagtgctgaa
tataccatgaatgctcaccaaaaagaacaaatccacgacaatatgacaaatttaatgcag
cagtctcagcaattatctatggggaggtcttctggttttaattttggtggctcatattca
tcacatcatcctcaacaacatcgtgcttcctcaataaatggatcaggggtttcctatcta
acatcgggcaactcagatcttcattttcatggtcctgagtatcagcaatttcagcagtct
caatctcgtttcataaatccatttagagataaagacataaaagccacgccaggatcccaa
agtgcactggatcaatatgggatagttggtctgttaagcgtcataaaaatggtaaagcca
gctttgagcactcttgctctgggacttgatctgacgaccctaggtttaaatttgaactca
tctgagtctcttaacaagaagtttgcatccccgtggtccgatgaacctgtcagaggagaa
cctgagttcagtgtgccggagtgctattatactaaacagactcctcctttaaagcaaacc
tatttcgcaagattccgtccagaaacattattttacatcttttacagcatgccaaaagat
gaggcacaactttttgcagcaaacgaactgtacaacagaggatggttttaccacaaagat
ctgaggttatggtttacgcgggtgaagaatatggaacctctggtcaaaacaaacagttac
gagaggggttgctacttctgtttcgaccccaatctgtggcaaacagcaagaaaggataac
ttcgtcctgcaatatgaaatggttgagaaaagacctgtgctgcctcagcaataa
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