Salvia hispanica (chia): 125196153
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Entry
125196153 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125196153
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125196153
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Helicases
125196153
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
125196153
NCBI-ProteinID:
XP_047950504
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All DBs
Position
6:33165285..33170951
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AA seq
767 aa
AA seq
DB search
MRAPKSRKFKLQKRLTEVQEIELLESWIDSCKPDAGSNPLSLSPPSKKSPIGRLPDGSFS
PYAGADKFFQLPLSKRTKDGLAASDYTKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAF
VIPVLEKLYRARWGPEDGVGCIIMSPTRELAGQLFEVLKKVGVHHGFSAGLLIGGRKDVV
EEKERVNGLNILVCTPGRLLQHMDETPNFECSQLQVLVLDEADRILDVGFKKELNAIISQ
LPKQRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESTTATPNRLDQTAMIVPLEQKLD
MLWSFIRTHLNSRILVFLSSCKQVKFVHEAFKKLRPGIPLKCLHGRMKQDGRMGIYASFC
EQHSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYLSGGRSVLFLAPS
ETKMLDKLQEKKIPIRIIKANTKRLESVSGSLAALLVKYPNLQSLAQRAFITYLKSIHKQ
RDKDIFDVTKLPIDEYSASIGLPLTPRVRFLKQKVKGKKVSEDLALVPESQSDVNPSELL
RGTVNAVKPEKAEIGLEESFLLEKKAQLELKDSILLEKKAQLFGEENETDIRDDLNATRV
LKKKKLKINMHRPVGTRVVFDDEGNTLPPLATLADSNAGSDSVKLDKDKVSQRYAELREM
MKVVDKEDKAIEHKRRKEKRIKQKMKLKRGREEDDDDDDDDDEVSEDDLSGSGREASMSR
PNKKGKKYFNSDSDNEDGERGKGENNTAPITVAEQEELALKLLSSMQ
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgagagcacccaaatccaggaaattcaagctccagaaacgcctcaccgaggtccaagaa
atcgagctactcgaatcatggattgattcctgcaaacccgacgccggctctaaccctctc
tccctttctccgccatcgaagaaatcgcctatcggcaggcttccagacggctccttttct
ccctatgccggcgccgacaagtttttccaactaccgctatccaagaggaccaaggatggt
ttggccgcctctgattacacaaaaatgaccgacattcagagggcttctctgcctcattcc
ctatgcggcagagatatcttgggagctgctaaaaccggctctgggaagactttagcgttc
gttatcccggttttagagaagttgtatcgagctagatggggtccagaggatggggtagga
tgcatcatcatgtctcctacaagagaattagctggacagctttttgaagttctaaaaaaa
gtaggagtgcaccatggatttagtgctggccttttgattggtggtcgtaaagatgttgtc
gaagaaaaagagcgtgttaacgggttgaacattttggtctgtactcctggcagacttctc
caacacatggatgaaactccaaattttgaatgttcacaactccaggttttagttcttgat
gaggctgatcgtattcttgatgtgggattcaagaaagaattaaatgctataatatctcaa
ctaccaaaacaaagacaaaccttccttttctcagcaactcaaacaaagtctgttcaagat
cttgcaagactcagtctgaaagacccagaatatcttagcgtgcatgaggagtctactact
gctactcctaatcgtttggaccagactgctatgattgttccccttgaacaaaagcttgac
atgctttggagttttataaggacacaccttaattcacgaattctggtatttctttcgagt
tgcaagcaggtaaaatttgtgcatgaagctttcaagaaactccgaccaggaattccgttg
aaatgtcttcatggaaggatgaagcaggacggacgtatgggaatatatgcatcattctgt
gaacagcactccgttttgttttgcactgatgttgcatctagagggcttgatttcaacaag
gctgttgactgggttgttcaggtagattgcccagaagacgttgcttcttacatacacagg
gtcgggagaactgctcgttacctttcaggtgggagatctgtgttattcctcgcaccctca
gagacaaagatgcttgacaaattgcaagaaaaaaagattcctattcgaatcattaaggca
aatacaaaaagattggaatctgtttctggttcattggcagctttgttggtcaagtatcct
aatctacagagtctggcccagagagccttcattacttatttgaagtccatccataaacag
cgcgataaggacatttttgatgtcactaaacttccaattgatgaatattctgcatcaata
ggtcttcccctgactcccagagttcggtttctgaaacaaaaagttaagggcaaaaaagtt
tctgaagatcttgccctggtgccagaaagccagtctgatgtgaatccttctgaactctta
agaggaactgtgaatgcagtaaagcctgagaaagcagagattgggttagaagagagtttt
cttttggaaaagaaagcacagcttgaattgaaagatagtattctgttggaaaagaaagca
cagctttttggagaagaaaatgaaactgatattagagatgatctgaatgctacaagggtc
ttgaagaaaaagaagttgaagatcaatatgcacaggcctgtgggtactagagttgtattt
gatgatgaaggaaacaccttgccgcctcttgcaacattagcagactccaatgctggatca
gattccgtcaagctggacaaggacaaagtaagtcagcgatatgcagagttgagagaaatg
atgaaagtggtagataaggaagataaggccatagagcacaagcgtcggaaggaaaagcgt
atcaagcaaaagatgaaattgaaaaggggtagagaagaggatgacgatgacgatgacgat
gatgatgaagttagtgaggatgatctatctggttcgggcagagaagcaagtatgagccga
ccaaataaaaaaggcaagaaatatttcaacagtgatagtgataatgaagatggtgagagg
ggcaaaggcgagaacaacacagctccaattacagtggcggagcaagaagaactggctctt
aagctgctcagctcaatgcaataa
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