Salvia hispanica (chia): 125196347
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Entry
125196347 CDS
T09851
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125196347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125196347
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125196347
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
125196347
NCBI-ProteinID:
XP_047950795
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Position
6:32317778..32321313
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AA seq
472 aa
AA seq
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MEMDAGKLFIGGIPWDTSEDCLRQYFQAFGEVVEAVIMKDRATGRARGFGFIVFADASVA
EKVVKEKHVIDGRTVEAKKAVPRDDHQNFNRNSGSIQGSPSHVRTKKIFVGGLPSTITES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLFKTFHELYGKMVEVKR
AVPKELSPGPTRSPSPGYNYGLSRASSFLNAYSPGYNPNSTSGYGMRMDGRFSPVTAGRS
GYPPYSPSNHNFGLNLDSGLGLNHGVSRDSGLGYGNGMNSYFSGDFSRYGSSNGYDLGSA
GTGSFMSSTNRNMWGNGSPNFVTNSATSNDFIGTRTGNAGIGSGFGSIGEIWGRSPVSAK
GTEAGSVIRENIAYGHGDNSFVDRASYTRENGGIPGSASFYSTPNNLYEESYGNLYGGSF
NGDEAWRSSSQELEGSASYGYGRGSGTAEAASETAAGYAGGYSVRSDRGIAA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggatgctgggaagctgtttattggtgggattccgtgggacacgagcgaggac
tgtctgagacaatatttccaagcttttggtgaagtggtggaagctgtcataatgaaggat
cgtgctacaggccgtgctcgtggctttggtttcattgtttttgccgatgcttctgttgct
gaaaaagttgtgaaagaaaagcatgtcatagatggcagaaccgtggaagcaaagaaagct
gttccgagggatgatcaccagaacttcaacagaaacagtgggagcatccaaggttccccg
agtcacgtccgcacaaagaagatttttgtgggaggtttaccatctactatcacagaaagt
gacttcaagaagtattttgatcaatttggaacaataactgatgttgttgtgatgtatgat
cacaatacacaaaggcctagaggctttggttttataacttatgagtcagaagaagcagtt
gataaagttctattcaaaacctttcatgagctttacgggaaaatggttgaggttaagaga
gctgttcccaaagagttatctccaggaccaacgcggagcccttcccctggctataactat
ggcctgagtagagcaagcagtttccttaatgcttattcgcctggatataatccaaattct
acaagtggatatggaatgagaatggatggtcgctttagtcctgtaactgctggtcgaagt
ggatatcctccctacagccccagtaaccataactttggactgaatttggattctggactc
ggtttgaaccatggggttagtagggattctggtttgggctatggaaatgggatgaattct
tattttagtggagactttagtcgatatggtagttcaaatggatatgacttaggcagtgct
ggaactggttcttttatgagcagtactaaccggaacatgtggggaaatggtagtcctaat
tttgtcacaaactcagcaacttcgaatgattttattggaactcgaactggaaatgctggg
ataggtagtggttttggaagtataggagagatttggggccgttcacctgtttctgctaaa
ggcacagaagctggctctgtaatccgagaaaacattgcttatggccatggggacaatagc
tttgttgacagagcaagttacaccagagaaaatggaggcattcctggctccgcatctttt
tactctacgccaaataatctttatgaagagagctacgggaacttgtatggaggctcgttt
aatggggatgaggcctggcgttcttcatctcaagagcttgagggatctgcctcgtatggt
tatgggcgtgggagtggcactgctgaggccgcatctgaaactgcagctggttatgctggt
ggctatagtgttagatcagatagagggatcgcggcctag
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