Salvia hispanica (chia): 125196386
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Entry
125196386 CDS
T09851
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125196386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125196386
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125196386
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
DUF3645
Motif
Other DBs
NCBI-GeneID:
125196386
NCBI-ProteinID:
XP_047950837
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Position
6:complement(33027485..33033037)
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AA seq
312 aa
AA seq
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MSTLPPPLNLKAVPFEATGSSSAAANKDRRMQSSEQLVLDLCNPDLRENALLELSKKREL
FQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRM
LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCL
RTMEMGSELSKTVATFIVQKILLDDVGLEYICTTAERFFAVGRVLGNMVAALAEQPSSRL
LKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSGCLREDPTTRRWLQQLLLNVQGPRV
AMEAGGFDHMMG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacccttcctccgccactgaacttgaaagccgtcccctttgaggccaccggcagc
tcctccgccgccgccaacaaagaccgcaggatgcaatcatctgagcagttggttctcgat
ctttgcaatccggatctccgagaaaatgcgcttctcgaactttccaagaagagagaactt
tttcaagatctggctccattgctgtggaattcctttggcaccattgctgctcttctgcag
gaaatagtctccatttacccagttttgtcaccgccaaatctgactcctgcacagtcgaat
agagtttgcaatgcacttgcgttacttcagtgtgtggcctcacatccggacacaagaatg
ttattcctcaatgcgcacattcctctctacttgtatccattccttaatacgaccagcaaa
tcaagaccctttgagtatctgaggcttacaagtttaggcgttataggtgctttggtcaag
gttgatgacaccgaagttatcagtttccttttgtctacggagatcattcccttgtgcttg
cgcactatggagatgggaagtgaattgtctaaaacagtggcaactttcattgtgcagaag
attttgcttgatgatgtgggcttagagtatatatgcaccaccgctgagcgcttttttgca
gtaggtagagtgctggggaacatggttgctgcactggctgaacagccttcatcacggttg
ctgaaacacattatcagatgctatcttcgattgtctgataatccaagagcttgcgacgcc
ctgagaagctgtctgcctgacatgcttcgagacgcgaccttcagtggctgccttcgtgag
gatccaaccacaagaaggtggctgcagcagttgcttctcaacgttcaagggcctcgggtt
gctatggaagctggtggttttgatcatatgatgggttga
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