Salvia hispanica (chia): 125196397
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Entry
125196397 CDS
T09851
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125196397
09123 Folding, sorting and degradation
03018 RNA degradation
125196397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125196397
03041 Spliceosome [BR:
shis03041
]
125196397
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125196397
mRNA degradation factors
5'-3' decay
Lsm complex
125196397
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125196397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
125196397
NCBI-ProteinID:
XP_047950848
LinkDB
All DBs
Position
6:41941169..41943001
Genome browser
AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctaacaatccatcgcagctcctcccatcagagttgattgaccgatgcatcggg
tcgaaaatatgggtgataatgaagggagacaaggagctggtgggtaccctccgcggcttc
gatgtgtatgttaatatggtgttggaagatgttactgaatatgagatcacttctgaagga
cgccgtattacaaaacttgaccaaatcttgctcaacggcaacaacattgccatattggtt
cccggtggctcacctgacccagaatga
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