Salvia hispanica (chia): 125196405
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Entry
125196405 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 36
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125196405
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125196405
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Helicases
125196405
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125196405
NCBI-ProteinID:
XP_047950861
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All DBs
Position
6:42700686..42704139
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AA seq
488 aa
AA seq
DB search
MEEEIQLEPSFQLFSRKKKKSTTTIDNPPPPATSTVKELEKVLNPNPTPAHVTFSDLGLA
EWAVNTCKELKMKRPTPVQYHCIPKILAGRDVLGLAQTGSGKTAAFVLPILQRLAEDPYG
VFALVVTPTRELAHQLADQFKALGSGLGLRCVEIVGGMDMITQSRSLMQRPHVVVATPGR
IKFLLEQNPDLPAIFSRTKFLVLDEADRVMDINFEAELRVIFQCLPKKRQTLLFTATMSS
NLQTLLELSANKTYFYAAYEGFKTVESLKQQYIFIPKNVRDVYLLHILNKMKEMGVRSAM
IFVSTCRSCELLSLLLEQLDLEVAALHSYKSQSLRLSALHKFKSGQVPILIATDVANRGL
DIPTVDLVINYDIPRYPEDYIHRVGRTARVGRGGLALSFITKNDVDLVHKIEDLIGKKFD
EFECKEKDVLEDITKVYKARRVTVMKMMDSGFEEKALARKEQKSRTKEIRRKSKKRKRGK
AVEVSQDS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaaatccaacttgaaccaagtttccaattgttctcccgcaaaaagaagaaa
tcaaccacaacaatcgacaatccgccgccaccagcaacctccaccgtgaaggaattggag
aaagtactaaaccctaaccctacgccggcgcacgtcaccttctccgacctagggctggcg
gaatgggctgtaaacacctgcaaggagctcaagatgaagcgtccaactccagtgcagtac
cattgcatccccaaaatcctggccggccgggacgtgcttggcctcgcgcagaccgggagc
ggcaagacggcggcgttcgtcctcccgatcctccagcgcctcgccgaggatccgtacggg
gtgtttgcgctggtggtgactccgacgcgggagctggcacaccaattggcggatcagttt
aaggcgctcgggtcgggattggggctgcggtgcgtggagattgttggtgggatggatatg
attacgcagtcgcggagtttgatgcagaggccgcatgtggtggttgctactccgggaagg
attaaatttctgcttgaacagaatcctgacttgcctgctattttttctagaactaagttt
ctagtgttggatgaagctgacagagtcatggacattaactttgaagcagaattgagagtt
atttttcagtgcttacctaagaaacggcaaactttactatttactgccaccatgagtagc
aacttacagacattacttgaactctcagcaaataaaacatatttctatgcagcatatgaa
ggttttaaaacagtggaatctctgaagcaacagtatatttttattcccaagaatgtgagg
gatgtgtacctcctccacatattgaacaaaatgaaggaaatgggtgttcgatctgccatg
atatttgtttccacctgcaggagttgtgaacttctgagtttgttgctagaacagcttgat
cttgaagtagcagcattgcactcttataaatcccagtcgttgaggctttctgcattacat
aaattcaaatccgggcaggtccctatactaattgcaaccgatgttgctaaccgtggtttg
gacataccaacagtagatttggtcataaactatgacattccaaggtatccagaggattat
attcatcgagttggtcgtactgctagagtgggaagaggaggccttgctcttagcttcatc
accaagaatgatgttgaccttgtgcataaaatagaagatcttatagggaaaaaatttgat
gagttcgagtgtaaggagaaggatgtacttgaggatatcacgaaggtatacaaagctagg
cgtgtgacagtgatgaaaatgatggacagcgggtttgaggagaaggccttggcacgaaag
gagcagaagtcgagaacaaaagaaattcgaagaaagagtaagaaacggaagaggggcaaa
gctgtggaagtatctcaagactcgtaa
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