Salvia hispanica (chia): 125196491
Help
Entry
125196491 CDS
T09851
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03020
RNA polymerase
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125196491
09124 Replication and repair
03420 Nucleotide excision repair
125196491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125196491
03400 DNA repair and recombination proteins [BR:
shis03400
]
125196491
Enzymes [BR:
shis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125196491
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125196491
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125196491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
125196491
NCBI-ProteinID:
XP_047950979
LinkDB
All DBs
Position
6:47484900..47492719
Genome browser
AA seq
1138 aa
AA seq
DB search
MQEIVDESAHIEIRPESQHEYYIFDDIMHGIYRISFGQIYLSKPMMTESDGETNTLYPKA
ARLRNLTYSSPLYVDVTKRVIRKGYDCEEVIETQEFAKIFIGKVPIMLRSSYCSLFNLSE
KDLMEMGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSIAEA
QSKAPSGMFVRMLSRPGAKGGSSGQYIRATLPYIRTEIPIIIVFRALGYISDKEILEHIC
YDFNDPQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAREILQREMLP
HVGIGDGHEHKKAYYFGYVVHRLLLCALGRRAEDDRDHYANKRLDLAGSLLGGLFRMLFR
KLTRDVRSYVQKSVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVL
NRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMV
YITVGSAANPILEFLDEWGTENFEEISPAVIPQATKTFVNGCWVGIHRNPELLVKTLRQL
RRQVDVNTEVGIVRDIHLKELRLYTDYGRCSRPLFIVDKQRLHIKKSDILALQQRESPEE
YGWNDLVRKGFIEYVDTEEEETTMISMTVNDLIRSRRNPDDAYSETYTHCEIHPSLILGV
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEH
LHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK
EDFGRPNRDNTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPVTQEEAQGKSARFT
SKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMT
FTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD
NISQALHKCGYQMRGFERMYNGHTGRVLNAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI
LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYKVHVCERCGLIAIAN
LKKLSFECRGCKNKTDIVQINIPYACKLLLQELMSMAISPRLLTKDVPTAKGQKGRGG
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagatcgtcgacgagtccgcgcacatcgagatccggcccgaatcccagcacgag
tattacatttttgatgatattatgcatggaatctacaggattagcttcggccagatatat
ctaagcaaaccgatgatgacagagtcggacggagagaccaacactctctatccgaaagcg
gcaaggctgaggaacttgacgtattcgtctccgctctatgttgatgtcacgaaacgagtg
atacgaaaagggtacgactgtgaggaggtgatagagacgcaggagttcgccaagatattt
attgggaaggtgccgataatgctgcgttcgagctactgcagtttgttcaatctctcggag
aaggacttgatggagatgggggagtgcccttacgatcaaggtgggtatttcatcatcaac
ggaagcgagaaggtcctcatcgcgcaggagaagatgagcacgaaccacgtgtacgtgttc
aagaagcgccagccgaacaagtacgcatacgtggcggaggttaggtccatagccgaggcg
cagagcaaggcgcctagcgggatgtttgtgaggatgctctctagacccggtgcgaaaggg
gggtcgtccgggcagtacatacgagctacgcttccatacatccggactgaaattccgata
atcattgtttttcgagctttgggatatatttcggataaagagattttggaacatatatgc
tatgacttcaatgatccacaaatgatggagctccttaggccatcattggaagaggcattt
gtgattcaaaatcaacaggttgcgcttgattatatcggaaagagaggatccaccgttggt
gttacaaaagagaagagaattaagtatgctagagaaattctccaaagggagatgcttcca
cacgttggaatcggagatggacatgagcacaagaaagcttactatttcggatatgttgtt
catagactattgctttgtgcacttggacgaagggcagaagatgatcgtgatcattatgcc
aataagaggctcgacctcgctggctctctactaggcggtctgtttcggatgctgtttaga
aagctcacgagggacgttcgatcctacgttcaaaagagtgttgataatgggaaagatgta
aacttgcaatttgcaattaaagcaaaaactgtcacaagtgggcttaaatactctcttgca
actggcaattgggggcaagcaaatgctgctggaactagagcaggagtttctcaggtgctc
aatcgcttgacatttgcctcgacactttcccatctgcgaagactgaactcgcctattggc
cgcgagggcaaactggcgaagccgcgccagctgcataactcgcattggggtatgatgtgc
cctgcggaaacaccggaaggacaagcatgtgggcttgtcaagaaccttgcacttatggtc
tacataactgtcggctcagcagctaatccgattctcgagtttttggatgaatggggtact
gagaattttgaggaaatatcaccagcagtgattcctcaggccacaaaaacatttgtgaat
ggctgttgggttggcattcaccgcaacccggagctgttggtgaagactctccggcagctt
aggagacaggttgatgtgaacacggaggttggaatcgtgcgagacatacacctcaaggag
cttcgtctgtacacagactacggacgctgcagccgtcccttgttcatcgtcgacaagcaa
aggctgcatataaagaagagtgacattcttgccctacagcaaagagaaagtcctgaggag
tatggatggaacgatctcgttaggaaaggattcatcgagtatgttgacacggaagaagag
gagacgacgatgatatcaatgaccgtgaatgatcttatacggtcaagacggaatccagat
gatgcatattcggaaacatatacgcattgtgagatccacccttcgttgatattaggcgtc
tgcgcttcaatcataccatttcctgaccacaaccagtcgcctcgtaacacttatcagtct
gcaatggggaaacaagcaatgggaatctatgtcaccaattaccagctaagaatggatact
ctggcctacgtcctttactacccgcagaagcctcttgtaacgacgcgtgctatggagcat
ctccacttcaggcagctcccagcaggcattaatgcaattgtttccatcgcgtgctactct
ggctataaccaggaagattctgtgatcatgaaccagtcctctatagatcggggattcttt
cgttctcttttcttccgttcgtatagagacgaagagaagaagatggggacgctagtgaag
gaggatttcgggcgtccgaatagggacaacaccatgggaatgaggcatggttcttatgac
aaactagatgatgatggttttgcacctcctggaactagagtctctggcgatgacgtgatc
atcggcaagacaacaccagttacacaagaagaagctcaaggaaaatcagcaagattcacc
agcaaggatcacagcactagcctacgccatagtgaaaccggaattgttgatcaggttttg
ctgacgacaaacgccgatggactgaggtttgtgaaaatacggatgcgatcagttcgaatt
ccacagatcggagacaagttcagcagcagacacggccagaagggaacgatcgggatgacc
ttcacacaagaagacatgccatggacgatcgaaggcatcactcccgacataattgtgaac
cctcatgccatcccatcccgtatgacgataggtcagctcatcgagtgcatcatgggtaag
gtcgcggctcacatgggcaaggaaggcgacgccacccccttcaccgatgtcactgtggac
aacataagccaagctcttcacaagtgtggttaccagatgcgcggttttgagaggatgtac
aatgggcacacggggcgtgtgttgaacgcgatgatcttcctcgggccgacctactaccaa
aggctgaagcacatggtggacgacaagatccactcgagggggaggggcccggtgcagatc
ctcacgaggcagccggcagaggggaggtctagggatggcggcttgaggttcggggagatg
gagcgtgactgcatgattgctcatggagccgcgcacttcctcaaggagaggctgtttgat
cagagcgacgcgtataaggtgcacgtgtgcgagaggtgtgggctcatcgccattgctaat
ttgaagaaacttagcttcgagtgcagaggatgcaagaacaaaacggacattgttcagata
aatataccttatgcatgcaagcttctacttcaagaactcatgtccatggcaatttctccg
cggctactcaccaaggatgttccgacagccaagggacagaaggggaggggcggatag
DBGET
integrated database retrieval system
