Salvia hispanica (chia): 125196868
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Entry
125196868 CDS
T09851
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125196868
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125196868
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
nSTAND_NTPase5
AAA_29
AAA_19
Motif
Other DBs
NCBI-GeneID:
125196868
NCBI-ProteinID:
XP_047951485
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Position
6:complement(10976416..10989684)
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AA seq
792 aa
AA seq
DB search
MEDDTGEKSSFIVGLIENRAKEVGVAAFDLRSASFDLSQYIETSNSYHNTRTLLNFYDPM
VTIVTPTKLAPDGMVGVSELVNKFCSSSTKVIMARGCFDDTRGAALVKNLAANEPSALGL
ETYSKQYYLCLAAAAATIKWIEAEKGLIITNHSLSVTFNGSFDHMNIDATSVQNLEIIEP
MHSCLWGSNNKKRSLFHILKTTRTVGGTRLLRANLLQPLKNIETINARLDCLDELMSNEQ
LFFGLSQALRKFPKETDKVLCHFCFKQKKVTNEVLTSDTSRKSQILISSIILLKTALDSL
PLLSKVLKDANSYLFKNIYKSICDNEKFTTMRTRIGEVIDDDVLHARVPFVARTQQCFAV
KAGIDGLLDIARRSFCDTSEAIYNLANKYREDFKLPNLKIPYNSRQGFYFNIPQKEIQGK
LPNKFIQVNRHGNNIHCSSLELASLNVRNKCAAKECYIRTECCLEELMEDIRKDVSQLTF
LAEVLCLLDMMVNSFAHTISTKPVEKYTRPRFTYDGPLAIDSGRHPILENVHNEFVANNI
FLSEASNMVVVTGPNMSGKSTYLQQVCLVVILAQIGCYVPAQFATLRVVDRIFTRMGTMD
SVESNSSSFMTEMKETAFILQNASQRSLIVVDELGRATSSSDGFAIAWSCCEHLLALKAY
TIFATHMENLSELATTYPNVKIVHFDVEIKNKHMDFKFQLKDGPRTVAHYGLMLASVAGL
PVPVIESAKSITSKITQKEAERIQISFCQHHDLQMAYRVAQRLICLKFSNQDEDSIRAAL
QNLKECCIQGGL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgatactggagagaaatccagcttcatcgtcggccttatcgagaaccgtgct
aaagaggtaggagttgctgcgtttgacttgagatcagcttcatttgatctttctcagtac
attgaaaccagcaactcataccataacacaagaacactgctgaatttttatgatcccatg
gtaactattgttacacctacaaagctagcaccagacggcatggttggagtctcagagctg
gtcaataaattttgctcttcatccacaaaggttataatggctcgtggttgctttgatgac
acaaggggggctgcgctggtgaaaaacttggcagctaatgaaccatctgctcttggtctg
gagacttattccaaacaatattatctttgcttggctgcagctgctgcaactatcaagtgg
atagaagctgagaaagggttgatcatcacaaaccactcactgtcagtcacatttaatgga
tcatttgaccacatgaatatagacgctactagtgtccaaaacttggaaattatagagccg
atgcactcttgtctttggggctctaacaacaagaagagaagtttatttcacattctcaaa
acaacaaggacagtgggaggcaccagacttttgcgcgccaatcttttgcagcccctaaaa
aatattgagactatcaatgcccgtctagattgtcttgatgagctaatgagtaatgagcaa
ctattttttggcctctctcaggctctccgtaagtttccaaaagaaactgataaggtcctc
tgtcatttctgcttcaagcaaaagaaagttaccaatgaagtcttgaccagtgacacttcc
agaaagagccaaatcttgatatcaagcattattcttcttaaaacagctcttgattccttg
ccactactctccaaggtgcttaaggatgcaaattcttacctattcaaaaatatatacaag
tccatatgcgataatgaaaagtttactactatgcgaacaaggataggagaggtcattgat
gacgatgttcttcatgcacgtgttccttttgttgctcgaactcaacagtgttttgctgtc
aaggcaggaattgatggacttctagatattgctcggagatcattctgtgatactagtgaa
gcaatatacaacttggcaaacaaatacagggaggactttaagctgccaaatttgaaaatc
ccatataatagcagacaaggtttttactttaacatacctcagaaggaaatacaaggaaaa
cttcccaacaagtttatccaggtcaatagacatggaaacaacatacattgttcttctttg
gaactggcctctttgaatgtaagaaacaagtgtgcagctaaagaatgctacatccggaca
gagtgttgcctggaggaactgatggaagacatacggaaggatgtctctcagctcactttt
cttgctgaggttttatgccttctcgatatgatggtcaattcatttgctcatacaatatca
acgaagccagttgaaaaatacaccagaccaagatttacatatgatggaccattggcaatt
gattcaggaagacatcccattcttgaaaacgtacacaatgagtttgtggccaacaacatt
tttctttctgaagcatcaaatatggtagttgtaacgggcccaaacatgagtgggaagagt
acttatcttcagcaagtttgcctggtagtcatcctcgctcaaattgggtgttacgttcct
gctcagtttgcaactttgagagtagttgatcgcatatttactaggatgggaactatggac
agtgttgaatcaaattctagctcgtttatgaccgagatgaaagagactgcttttatcctg
caaaatgcttctcagagaagtttgattgttgtagatgaattagggagagcaacatcttcc
tctgatgggtttgcaattgcttggagctgctgtgaacatctactggctttaaaagcgtac
accatatttgctactcatatggagaacttatctgagctggccacaacatatccaaatgta
aaaattgtacattttgatgtcgagatcaagaataagcacatggatttcaagtttcaactg
aaagatgggccccgaactgtagcgcactatggccttatgctagcaagcgtagctggacta
ccggttccagtgatagagtcggccaaaagtatcacatcaaagattacacagaaggaagcg
gagagaatacagatcagcttttgtcagcatcatgatcttcaaatggcatatcgcgttgct
caacgacttatatgcctgaaattctctaaccaagacgaagactctattcgcgcagccctg
cagaatctcaaggaatgctgtattcagggaggcctttga
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