Salvia hispanica (chia): 125197285
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Entry
125197285 CDS
T09851
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125197285
03036 Chromosome and associated proteins [BR:
shis03036
]
125197285
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
125197285
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125197285
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
125197285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_16
DEAD
AAA_22
Cep192_D4
SLFN-g3_helicase
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125197285
NCBI-ProteinID:
XP_047951967
LinkDB
All DBs
Position
6:complement(7994022..7998757)
Genome browser
AA seq
946 aa
AA seq
DB search
MGTINDKSDDEYSYVGDKGDIGFIDFDNCQSVCSYNPAEESDIFHISVPFHLIEGGKPQS
GIVGETMSDSVTIRNTSKESLDLWSVKIFDSKPEDSFKISLMKPPTSDSDMEYIQDYVEL
DSLDERVLRPNQALTIWLSCKPKEIGVHSAAIHFSIGDEVIERLLFLLAEDKISKSLSSS
RPYQRPWRKKHDIFNPHAPDAAYVAARRPSQGRGRQFKFQLPMYSIPEEILTMLSRGEIP
DPVNEGLTLENYGAFFKNLLAMEEIKLEEDMQSYYMEGVTMKSKRGRQTLSLEVPGLAEK
RPSLVTGDYIFAKLSFDDETSRTRYQGYIYRVEAENILLKFDQQFHLSHRDGNLYNVEFN
YNRTNMRRLYQAVEAAQSLERNFLFPSAMSKVRLREYKALTPICSNLNEEQTVAVNTILV
RRGGPPYVIHGPPGTGKTKTLIEAILQIYREDRHTRILACAPSNSAADHILDRLINEEGV
QVREHEIFRLNAYTRPFEDVNPNHISFCSHEDGIFMCPPCKLLEQYRIIVSTYASASILY
SSGIQRGRFSYIFLDEAGQASEPEAMVPISHLYSRNTVLVLAGDPMQLGPVVFSTEAEVH
GLGTSYLERLFECDLYRGGDTSFMTKLVRNYRTHEAILKLPSEMFYAGELIPCKDKNSLT
SWEGIIPDKEFPLLFIGVRGCDEREGSNPSWFNRIEASKTIEMIKVLIEEKGIKEEEIGV
IAPYRKQVSKIREALECRGNPNVEVGSVEQFQGQEREVIIISTVRSTVKHNEFDKVHYLG
FLSNPRRFNVAVTRAKSLIIIIGNPHIICKDPNWNKLLWYCVENNSYKGCFLPKQEEESE
QAEGEYQSYYDGNNQPSGSNWDDQGGGWQPSQGQWGEDVGWTRSDVPLGEEENNNIQPSD
VPWGEEENSNVQPSDVPRVNETSLQSSNVPSWGNKDDFHNTDVPRE
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaattaatgataaatcagatgatgaatactcatatgttggagataaaggggat
attggatttattgactttgataattgtcaatctgtttgtagctataaccctgctgaggag
agtgatatattccacatttctgtcccgtttcatctaattgaaggaggaaaacctcaatca
ggaattgttggagaaacaatgtctgattcggttactataagaaacacctccaaagagtcg
ttagatctctggtctgtgaagatttttgactccaaacctgaggattcatttaagatttca
ttaatgaagcctcccacatctgattctgatatggagtacatccaagattatgtggaatta
gattcgttagatgagagagtgctcagaccaaatcaggctctgactatctggttatcctgc
aaaccaaaggaaataggcgtgcactctgcagctatacacttcagcattggcgatgaggtg
atcgaacgtctccttttcctgctggcagaagataagatctccaagtctttgtcttcttca
agaccataccaaaggccttggagaaagaaacatgatattttcaatccccatgcacctgat
gccgcatatgttgcagcacgacgcccttctcagggtcgaggtcgccagttcaaatttcaa
ctgcccatgtattctattccagaagaaatcctcaccatgttaagcaggggtgagattccc
gacccagtcaatgaggggctaacactagagaactatggtgcattcttcaagaatctatta
gctatggaggagataaagttggaggaagatatgcagtcgtattacatggagggtgtcacc
atgaagagtaagagagggcggcagacgttgtctcttgaggtcccgggattggctgagaaa
aggccttcacttgttactggcgactacatctttgccaagctttctttcgatgatgaaact
tcaagaactcgatatcagggctacatctatcgagtggaagctgaaaatatactgttgaaa
tttgatcaacaatttcaccttagtcacagagatggtaacctctacaatgtagagttcaac
tataatcggacaaatatgcggcggttgtatcaagctgttgaagctgctcaatctttagaa
aggaactttctgttcccatctgcaatgtccaaggtgagactgagggaatacaaagcactc
acacctatatgttcgaacctgaatgaggagcaaactgtggctgttaacacgatccttgtc
cgtagagggggccctccttatgtcatccacggccccccgggtacgggtaaaacaaagact
cttattgaagctatccttcaaatttaccgtgaagatagacatacccggattctggcctgt
gcaccttcaaatagtgcagctgaccatatattagacaggctgatcaatgaggaaggagtt
caggttcgggagcatgaaatctttcggcttaatgcatacacgcgtccttttgaggatgtc
aaccccaatcacatcagtttttgcagtcacgaggatggcatctttatgtgtcctccgtgc
aaactccttgagcagtacaggatcatcgtatctacgtacgcaagtgcctcaattctatat
tcatcaggcattcagagaggtcgattttcctacattttcttagacgaggctggccaagct
tctgagccagaagctatggttcctatatcacatctgtactcaagaaataccgtcttggtt
cttgcgggagaccctatgcagctgggacctgtagttttctctacagaagctgaagtacat
ggacttggcacttcatatctggagagactttttgagtgtgacctctatcgtggaggagat
actagttttatgacaaagttggtgagaaattatcggacacacgaggcaatactgaaactc
ccttcagaaatgttttatgctggggaactgatcccatgtaaagataaaaattccctaact
tcctgggaaggcataattccagataaggagttccctttgctttttataggcgttcgaggc
tgtgatgaaagagaaggaagtaatccatcttggtttaacaggattgaagcaagcaagact
attgagatgattaaagttttgatagaagaaaaagggatcaaagaggaagagattggggtt
attgcaccgtaccggaagcaggtaagcaaaataagagaagctcttgaatgtcgtggcaat
ccgaatgttgaagttggaagtgtcgagcagttccagggacaagagagggaagtcattata
atctctactgtccgttctactgtgaaacacaacgaatttgacaaggttcattatttggga
tttctgagcaacccaaggaggtttaatgttgctgttacccgagccaaatctttgatcata
attattgggaatcctcacataatttgcaaggatccaaactggaacaagctcttgtggtac
tgtgtggaaaataactcgtacaagggttgcttccttcctaaacaagaggaagagtccgaa
caggctgagggagagtaccagagttattacgatggaaataatcagccatctgggtcaaat
tgggatgatcaaggaggaggatggcagccttctcaaggtcaatggggcgaggacgttggc
tggacacgatcggatgttcctttgggcgaagaagaaaataacaatatccagccttcagat
gttccttggggtgaggaagaaaacagcaatgtccaaccatctgatgttcctcgggttaac
gaaaccagtctccagtcttccaatgttccttcttggggcaacaaagatgactttcacaat
accgatgtgccaagggagtaa
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