Salvia hispanica (chia): 125197501
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Entry
125197501 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16-like
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125197501
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125197501
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125197501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
125197501
NCBI-ProteinID:
XP_047952213
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All DBs
Position
6:36959304..36966255
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AA seq
614 aa
AA seq
DB search
MVKRNRQPQSANDQEIAEDKPVVAGEVVEEEHVAAGEVIEEEQDDDERSFEELGLEARLV
RALSKKSIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPVLHNLFADSPSKSNL
APAVFILVPTRELCQQVYSEVTSLIELCRVQLKVVQLRSTMSASDLKTSLAGLPDIVVST
PACVQTCLKNGTLQAKALQESLSVLVLDEADLLLSYGYEDDIKALTAYVPKRCQCLLMSA
TSSADVEKLKKLILHNPYILTLPEVGDVKDDIVPRNVQQFYISCSARDKLIHILALLKLE
LIQKKVLIFVNSIDTSFRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAT
DDSQSAEEQNDKETHSSKKKSKKHSKKLDAEFGVVRGIDFKNVYTVVNYDMPQTAPGYVH
RIGRTGRAYNTGASVSLVSPEEMEIFEEIKSILGKNDADDSKYIAPFPLLSKNAVESLRY
RTEDVSRSITKLAVRESRAQDLRNEILNSEKLKAHFQDNPKDLDLLKHDKVLSKKEPAAH
LRDVPEYLLDATTKEASKIVKLARAAMGNTGSTNRRGFKGKSKKSRDPLKTFSAEASKRG
RKGGMKRKGKNQDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaagaaatcgccaaccacagagcgcaaatgatcaagaaattgcagaagataaa
ccggttgttgcaggagaagtagtagaagaagaacatgttgctgcaggagaagtaatagaa
gaagaacaggatgacgacgagcggagcttcgaagaattagggctcgaagcccgactagtt
cgtgccttatcgaagaaatcaatcgagaagcccactccaatccagcgcgttgctatccct
ctcatcctcgagggtaaagatgtggtggctcgggcaaaaaccggctccggtaaaacatta
gcttatcttctcccggtgcttcacaatctgttcgctgattcgccatccaaatcgaatctt
gctcccgccgtgtttattcttgttccaactcgagagctgtgccaacaagtttattcggaa
gtgacgtcactgattgagctatgcagagtgcaactaaaagttgttcagctaaggagcacg
atgtctgcttctgacttgaaaacgtctttggctgggcttcctgatattgttgtatcaact
cctgcttgtgtacaaacatgcttgaaaaatggtactcttcaagctaaagctcttcaagaa
tcactttcagttcttgtccttgatgaggcagatcttctgttgtcatatggatacgaggac
gatataaaagcacttacagcttatgttcctaagcgctgccagtgccttctcatgtctgct
acttcaagtgctgatgttgaaaagctgaaaaagcttatattacataacccatacattcta
acactaccagaggtgggagacgtaaaggatgacatcgtccccagaaatgttcagcagttt
tatatttcgtgtagtgcacgtgacaagcttatccatatccttgctctgttgaaactggag
ctgattcaaaagaaagtgctgatttttgttaattccattgacacgagttttagattgaag
ctattctttgaacagtttggaataaaatctgcagttttaaatgctgagctgcctcagaat
tctcgcctacatattcttgaggagttcaatgctggtctgtttgattaccttattgcaact
gacgacagtcaatcagcagaagagcagaatgataaggaaactcattcttctaaaaaaaaa
tctaaaaagcattccaagaagttggatgcagaattcggggtagtaagaggaatagacttt
aaaaacgtatacacggtggttaactatgacatgcctcaaactgcacctggatatgtgcat
cggattggacgtactggaagagcatataatactggtgcttctgtttctctagtttctccc
gaggagatggaaattttcgaagagatcaaatctattttgggcaaaaatgatgcggatgac
tccaaatacattgctccattccctttgcttagtaaaaatgccgtggagtccttgcgctac
agaaccgaggatgtttcgaggagtataacaaaacttgcagtgagagaatcacgagcacag
gatctaagaaatgaaattctcaattctgagaagttgaaggctcattttcaagataaccca
aaggacttagatctgttgaaacatgacaaagttctgagcaaaaaggaacctgctgcgcac
cttcgtgatgtgccggagtacttacttgacgcaacaacaaaagaagctagcaagattgta
aagcttgctagagctgccatgggaaatactggttctactaatcgcagaggtttcaaagga
aaatccaaaaaaagtagagatcccttgaaaacattctccgctgaggcatcaaagcggggc
cgtaaaggcggaatgaagaggaaaggtaagaaccaggatgagtga
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