Salvia hispanica (chia): 125198259
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Entry
125198259 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125198259 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125198259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125198259
03019 Messenger RNA biogenesis [BR:
shis03019
]
125198259
04121 Ubiquitin system [BR:
shis04121
]
125198259
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125198259
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125198259
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125198259
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125198259
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125198259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_4
zf-Tbcl_FmdE
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
125198259
NCBI-ProteinID:
XP_047952597
LinkDB
All DBs
Position
Unknown
AA seq
228 aa
AA seq
DB search
MSMSTAVRLCGECPMELNLELLYPNQPLLSECECGYQICFGCWNSLVARYKKGAVGTCPA
CGKRYDKARFVSRLPRPKPKAIAFTTVTVRGIPLKFANDATLMSNTCFGKYGKVTKVSIA
RKADGEILFYKPSICFEIEATFEKKQNALQCIKALNGFKLDGSQLVASYAIGSDYMDRGG
DEFPAPLLDDTDEVVPNERGASNRGQSISGIRVDAEVADALKMDDCCG
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgtcgacggctgttagactatgtggagagtgtccgatggagctgaatttggag
ctgttgtatcctaaccagccgctgctttcagaatgcgaatgcggttatcagatttgtttt
ggatgttggaacagcctagtagcacggtacaagaaaggtgctgtagggacttgtcctgcg
tgtggtaaacgctatgataaggccagatttgtttccaggctaccgaggccaaagccgaaa
gcgattgcatttactactgtaactgtgaggggaatacctctcaaatttgctaatgatgct
actttgatgagcaatacatgttttgggaaatacgggaaggtgactaaggtctcaattgca
agaaaagctgatggggaaattttgttctataaacccagtatatgctttgaaatagaagca
acgtttgaaaaaaaacagaatgctctgcagtgcattaaagccctgaatggcttcaaacta
gatggatcacagttggtggcaagttacgcgattgggtctgattatatggatcgcgggggc
gacgaatttcctgctcctctcctggatgatactgatgaagtggtcccgaacgaaagggga
gccagtaatcgcggacaatcaataagtggcatacgtgtggatgcggaagttgctgatgca
ctaaagatggatgactgttgtgggtga
DBGET
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