Salvia hispanica (chia): 125198419
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Entry
125198419 CDS
T09851
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125198419
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125198419
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125198419
NCBI-ProteinID:
XP_047952724
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All DBs
Position
Unknown
AA seq
402 aa
AA seq
DB search
MALSFLFLLFTFLLPSLIASSPTLKDPELVVQEVHRKLNASRRKLGFLSCNTGNPIDDCW
RCDSNWEKNRQKLADCAIGFGKNAIGGRDGKIYVVTESGGDDPVNPKPGTLRHAVIQDEP
LWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIANGPCITIQGVTNIIIHGIHIHDCKQ
GGNAMVRDSPQHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISN
NYMTHHDKVMLLGHSDSYTQDKGMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE
MYAIGGSADPTINSQGNRFLAPNDRFSKEVTKHEDAPESQWKSWNWRSEGDLMLNGAYFT
PSGAGASSSYAKASSLGARPSSLVSSITAGAGSLNCRKGSHC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcactatcattccttttcctcttgtttacattcctcctcccatctctcattgcctca
tctccaacactcaaagaccctgagctagtagtccaagaagtccataggaaattgaatgcc
tcgaggaggaaattggggttcctgtcctgcaacactgggaaccccatcgatgactgctgg
cggtgcgactctaactgggagaaaaaccgccagaagttggccgactgcgcgattggtttc
ggcaagaatgccatcgggggccgagacggaaaaatctacgtcgtgacagaatccgggggc
gacgaccccgtgaacccgaagcccgggacgctccgccacgcggtcatccaggacgagccg
ctatggatcatattcgcgcgcgacatggtcatccaattgaaggaggagttgatcatgaac
tctttcaagaccattgatggtaggggggctagtgtgcacattgccaatggtccatgcatc
accatccaaggcgtgaccaacatcatcatacatggcatccacatacatgattgcaagcaa
ggcgggaatgctatggtgcgggactccccacagcactacgggtggaggaccatatccgac
ggcgacggcgtgtcgatctttggcgggagccacgtgtgggttgatcattgctcactctcc
aactgcaaagatggcttgattgatgccatccatgggtccaccgccatcaccatatcaaac
aattacatgacccatcatgataaagtcatgcttttggggcatagtgactcatacacacaa
gataaagggatgcaagtcaccattgcctttaatcactttggtgaagggctagttcaacga
atgccgagatgcagacacggatactttcatgtggtcaacaatgactatacacattgggag
atgtatgccattggtgggagtgcggatcccacaattaacagccaaggcaatagatttctt
gcaccaaatgatagattcagcaaagaggtgaccaaacacgaggacgcacccgaaagtcag
tggaagagttggaattggagatccgaaggggatctaatgttgaatggcgcatatttcacg
ccgtcgggggctggggcgtcgtcgagctatgctaaagcgtcgagccttggcgcccgaccg
tcgagcctagtcagctcgatcacggccggagccggtagcctgaattgtcggaaggggtct
cattgttga
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