Salvia hispanica (chia): 125198558
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Entry
125198558 CDS
T09851
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125198558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125198558
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125198558
Spliceosome [BR:
shis03041
]
Complex C
Other components
Step II factors
125198558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
HA2_C
AAA_19
AAA_22
Secretin_N
Arc_MA
ABC_tran
HA2_N
AAA_29
Motif
Other DBs
NCBI-GeneID:
125198558
NCBI-ProteinID:
XP_047952833
LinkDB
All DBs
Position
Unknown
AA seq
1752 aa
AA seq
DB search
MSQFSGYGRRQPPFAARPRHNPQEPPFRRSSYQQHQYRSQFPPNNYDRPPGDIPARPNFI
VQLRPDSQKSNSVRRADAEAVIRKLKFQPQRANFVMSNFNSASLSYEQWSETLATIVQLW
EMKLGDKGFSFVPRLVSNVELPSDRLELNDRLKVLFIEKLKRLKEGELVEKWEKKLGTVM
DEVKRISRILSDKASLRVFNELLEKKEVLVGESTFISNRIEEFRTGIRCIEEYLEDGNKE
EHDFEVLRFVRGKIEWGRIYCLMMRECRRLDDGLPIYSHRQAIMKQIHCQQVTVLVGETG
SGKSTQLVQFLVDSGICGDGAIICTQPRKLAAITLAERVKEESFGCYDDTSVVCYPSYSS
LQEFESNVVFATDHCLLQHYISDNQLSMISCIVVDEAHERSLNTDLLLALIKTLLCQRPC
LRLIIMSATVDADQFSDYFFGCRTLHVTGRHFPVAVKYEPCHSEVSPASKLMPSYVHDVL
NTVLKINRTEREGTILAFLTSQSEVEWACENFQAPYAVALPLHGKLSYEDQHRVFLAYPG
KRKVIFATNVAETSLTIPGVKYVVDPGMVKESMYEPATGMNILKVGRISQSSAKQRAGRA
GRTEPGTCYRLYSEDDFESMLPHQEPEIRKVHLGVAILKIMALGVKDLQEFDFVDAPSAS
SIDLAVRNLVQLGAIVLKNGAYELTTDGKHIVKLGIEPRLGKIILQSFRQQLGKEGLVLA
AVMANSSSIFCRVGTVDAKLKSDSLKVRFCHPTGDLFTLLGVYREWESVPREKRNTWCWE
NSINAKTLRRCQDTVIELEACLKNEMNIIVPNYWYWNPQIHGEHDKILKNVILSSLPGNV
AMYSGHDQLGYEVALTRKHVQLHPACSLFNFGQRPAWVVFSEIISVSNEYLTCVTACDFD
YFSTLSPSLPFDFLVMNSQRLHKRVLSGFGSVQLKRFCGKSNSNVRFLESKIRESYADER
IGVVVDVDQNEVLVYASSQDIEKVMGLVIEALEYEKKLLQNECVEEFMYGPKVLNSIALF
GAGAEIKHLELEKRCLSVDIYHSNASTLDQKELLLFLESFTSGFVCSVSRLLVSGPENEE
KDKWGRVTFLTPDAAEKAAVLNEIEFSGGLLKIIPSMKNHDSDLRMMSSNRIKAKISWPR
RRSKGIAFVKCNPDDVDAMVNDLSNLVIGDRFVWCRPSDKFPDSIKITGLDRDLSQEDIR
PVIRAATSRHITDFFLLLENANDDLLPLPPACEDAILREISPFMPRRNKGVPVNVKVFPP
EAKDSLMRAQIDFDGSLHLEAARALEHIDRKVLPGCDSWQKIVCHRVFDGSVYCPPSVYH
VIGNEFHHFLRRLRHDPHYQGVEWNLEKTHNGGIRVKISASATRLVFELKNSLSELVGGT
IIHHPDITPSVLQILFSRDGVLLMKSVERGTGTQIFFDKQKMTLRVYGPPEKIGYAQQNF
VRGLLALHDSRQLEIRLRDGVLPPDMMKRVVQHFGPDLCGLRDKVPGVELSLNVRRHTIS
IVGNKALKQEVENIIHDLAQPNELQILENDYHSACPICLCEVEDSYMLEGCHHKACRSCL
VEQCESAIRNRDCFPLLCAKEGCRAPILVADLRSLFPERLHELFQASLGAYVAASGGALM
FCPSTDCPSVYRVVDPSGSDAAFRCGVCFMETCMKCHMEYHPLLSCEKYREFKADPDSSL
KEWCMGKENVKTCPGCGSTVEKVDGCNHVECRCGRHVCWVCLDSFDSSDDCYSHLRSAHP
NIEVDMFEFDVL
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaattcagcggctacggccgtcgtcagccgccgttcgccgctcgtccccgccac
aacccccaggagccccccttccgccgctcttcgtaccagcaacaccagtacagatcacag
ttcccccccaacaactatgatcgcccccctggagacatcccagcccgccccaatttcatc
gtccagctacgccccgactctcagaaatcgaattccgtcagacgtgctgatgccgaggcc
gtgattcggaagctgaaattccagccgcagagagcgaattttgttatgtccaattttaac
tccgcctcactatcttacgagcagtggagtgagactctagcgacgattgttcagttgtgg
gagatgaaactgggcgataaggggtttagcttcgtgccccgccttgtttcgaacgtcgag
cttccgtcggataggttggaattgaacgatcggttgaaggtgttgtttatcgagaagttg
aagagattgaaggagggtgagctggtggagaagtgggagaagaaattgggtactgtgatg
gatgaagttaaaaggatttctaggattttgagtgataaggcaagcttacgggttttcaat
gagctgttggagaaaaaggaggttttggtgggtgagagtacctttatctccaacaggatt
gaggaattcagaactggcattaggtgtattgaagagtatttggaggatgggaacaaggag
gaacacgattttgaagttcttcgatttgtacgtggaaagattgaatggggaaggatttat
tgtttgatgatgagagaatgcaggaggcttgacgatggactgcctatttattcccatcgg
caggcgatcatgaagcagatacactgccaacaggtcacagtgctggtaggtgagaccggt
tcaggaaagagcacacagttggttcagtttcttgttgattctggaatatgtggcgacggt
gccattatttgcactcagccacgaaaacttgctgcaataactttggcggagagggtcaaa
gaggaaagctttggctgctatgatgatacttcagttgtctgttacccgtcatattcatca
cttcaggagtttgagtccaatgtggtgtttgcaaccgatcactgcctgttgcagcactac
ataagcgacaatcaactatccatgatttcttgcatagttgttgacgaggctcatgaaagg
agcttgaacacagatctccttctggctttgatcaagacactcctctgtcagaggccctgt
ctcaggcttattataatgtctgctactgtggatgcagaccaattttctgattactttttt
ggttgtaggaccttgcatgtgactggaagacacttccctgttgctgttaaatatgaaccc
tgccattctgaagtgtctccagcttctaaattaatgccgtcatatgtacatgatgttcta
aatacagtactgaagatcaatagaactgagagggaaggcaccattcttgcattcttgacg
tcgcagagtgaagtagaatgggcttgcgagaattttcaagctccgtatgctgtagcattg
cccttacatggaaaactttcatatgaagaccaacatagagtatttctagcctatccaggt
aaaagaaaagttatatttgccaccaatgttgctgagacttcgttgacaattcctggtgtc
aagtatgtggtggaccctggaatggtaaaagagagcatgtatgaacctgctacaggcatg
aatattctcaaggttggcagaatcagtcagagctctgctaaacagcgagcgggccgtgct
gggagaacagaacctgggacatgctatagattgtactcagaagatgattttgaatcaatg
ctgcctcaccaggaaccagaaattcgcaaggttcatcttggcgtagcaattttaaaaatt
atggcattgggtgtgaaggatctgcaggagtttgactttgttgatgcacctagtgccagt
tccatagatctggctgtcagaaatctcgtccagctaggagcaattgtgctgaaaaatggt
gcatatgagttaacaactgacgggaaacacatagtcaagttgggtatcgagccccggctt
ggtaaaataattttgcaatcctttcgccagcagttgggtaaagagggtcttgttcttgct
gcagtaatggcaaattctagtagcatattttgcagagttggtacggtggatgccaagttg
aaatctgattccctgaaggtgaggttttgtcatcccactggtgatctcttcacattactt
ggtgtttacagagagtgggaatctgtgccgcgtgaaaagagaaacacttggtgttgggaa
aatagcataaatgcaaagacgttgaggagatgccaggacactgttatagagctggaagct
tgccttaaaaatgaaatgaatatcattgtgccgaactattggtattggaatccccaaata
catggagagcatgacaaaattttgaaaaatgtaatactctcttccttgcctggaaatgtg
gctatgtactctggccacgatcaacttggttatgaagtggcactaacaaggaaacatgtg
cagttgcatcccgcatgttctttgttcaatttcggccagaggccagcctgggtggttttc
tcggaaataatatctgtgtcgaatgagtatttaacatgtgttacagcatgtgattttgat
tatttctccaccctttctccttctctaccatttgatttcttggtaatgaacagccaacgg
ttgcataagagggttttatcagggtttggaagtgttcagttaaaaaggttttgtgggaaa
tctaatagcaatgtgcgctttctcgaatcaaaaataagagagtcctatgctgatgaaagg
attggtgttgtagttgatgttgaccagaatgaggtgctcgtgtatgcttcttcacaggat
attgagaaagtgatgggtttagttatagaagcattggagtacgaaaagaagctgttgcag
aatgagtgtgttgaagaatttatgtatggccctaaggtcttgaactctattgctctcttt
ggagctggtgccgagataaaacatctggaacttgagaagagatgtctgtctgtggacata
tatcattctaatgctagcacacttgatcagaaagagcttctactctttcttgagagtttc
acttcaggttttgtttgctctgttagcaggttgttggtctctggtccggaaaatgaagag
aaggacaagtggggaagggtaacatttttgacacctgatgctgcagagaaggctgctgtg
ttaaatgagatcgaattcagtggtggcttgttaaagatcattccttctatgaaaaatcat
gacagtgatctcagaatgatgtcttccaatcgtatcaaagccaaaatctcatggcctcgt
cggcgcagcaaagggatagcatttgtgaaatgcaatccagatgatgttgatgcaatggtc
aatgatctctccaatctagttataggtgacaggtttgtttggtgtagaccaagtgataag
tttccagacagcattaaaattactgggcttgacagggacctttctcaagaagatatacgt
ccggtcataagagctgcgacaagtaggcatatcacggacttctttctgctgctagagaat
gcaaatgacgatcttttaccactaccaccggcttgtgaggatgccattttacgtgaaatt
tctcccttcatgcctagaagaaataagggtgtccctgttaatgttaaggtatttccacca
gaagcaaaggatagtctaatgagagcccaaattgattttgatggaagtttacatttggag
gcagctagggccctggagcatattgaccgcaaagtactacctgggtgtgactcgtggcag
aaaattgtatgccatcgagtatttgatggctctgtgtattgccctccctctgtatatcat
gttatcgggaacgagtttcatcatttcctcagaaggcttcggcatgatccgcattatcaa
ggtgtagaatggaatctggagaaaacccataatggtggcatccgagtaaagatatctgct
agcgctacgagacttgtttttgagttgaaaaattctctgtcggagcttgttggagggacg
attatacatcatccggatataaccccttctgttcttcagattcttttttcgcgtgatgga
gttctgcttatgaaatctgttgagcgagggactggaacacagatattcttcgataagcag
aaaatgactttgagagtctatggtcctccagaaaagatcgggtatgcacaacagaatttt
gtcagaggtctccttgccctacatgacagcaggcaactggagattcgacttcgtgatgga
gtcttacctcctgatatgatgaagagagttgttcagcatttcgggccagatctttgtgga
cttagagataaagtgccaggggtggagctgtctttaaatgtgagacgccacactatatct
attgtaggtaacaaagcattgaagcaagaagtcgaaaacataatacatgatcttgcacag
ccaaatgagttgcaaattctggagaatgattatcatagtgcttgtcccatttgcttatgt
gaagtggaggattcgtacatgcttgagggctgccatcacaaagcctgccggtcatgtttg
gttgagcagtgtgaatctgctatcagaaatcgtgattgtttcccgttgctctgtgctaaa
gagggttgcagggctccaatcttggttgctgatttgaggtctttgtttcccgagcgactt
catgaacttttccaggcttccttgggtgcgtatgtggcagctagtgggggtgctttgatg
ttttgcccgtcgaccgactgcccttcagtctacagggtagtggatcccagtgggtccgat
gcagccttcagatgcggcgtgtgcttcatggagacgtgtatgaagtgccacatggaatac
cacccgctcctgtcctgtgagaagtatcgcgagttcaaagctgatcccgactcatcgctc
aaggagtggtgcatggggaaagaaaacgtgaagacctgccctgggtgtgggtccacagtc
gagaaggtggacgggtgcaaccacgtcgagtgcaggtgcgggagacacgtttgctgggta
tgcttggattcgtttgacagttctgacgactgctacagccatctgaggtctgcacaccca
aacattgaggtggatatgtttgagtttgatgtgttatga
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integrated database retrieval system
