Salvia hispanica (chia): 125198714
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Entry
125198714 CDS
T09851
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125198714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125198714
03036 Chromosome and associated proteins [BR:
shis03036
]
125198714
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125198714
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125198714
PBAF complex
125198714
GBAF(ncBAF) complex
125198714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
125198714
NCBI-ProteinID:
XP_047952968
LinkDB
All DBs
Position
Unknown
AA seq
543 aa
AA seq
DB search
MAANSNNLQKNIGGSSPFGNSMPVNPSLQQQLGSGFPXGQFQFSEAQAQALAQAQAQSKA
QAQAQVQAHAHAQMMAAHAHLQAQLQAAQGLAFNQAHPGGMGSLGSQSPSLSGAGSMGAK
RFPQKPPARPPSFLPSNVASPMRPMDASAAARRKKQKLPEKQLHERVAAILPESALYTQL
LEFESRVDAALTRKKIDIQDALKTPTYLQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTL
KIIGRILEEGMDADQAAMMQKANPSYPKFSTFFKRVTITLDQKIYPDNHLIIWDSARSPA
PHEGFEVKRKGDQEFTASIRLEMNYMPEKFKLSAPLTELLGIEVDTRSRIMAAIWHYVKA
RKLQCPDDPSSFNCDPPLQRVFGEGKVKFTAVTQKITPHLFPPQPIHLEHRIKLSGNSPV
GTACYDVLVDVPFPIQRELNALLANTEKTKEIDACDEAICAAIRKIHEHRRRRAFFLGFS
QSPVEFINALVDSQNKDLKLVSGEGSRNAEKERHSDFYNQPWVEDAVIRYLNRKLPADAS
GHT
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaatagcaacaatcttcaaaagaacattgggggttcgtctccttttgggaat
tctatgcctgtgaatccatcactgcagcagcaattggggtctggatttcccnnaggccag
tttcagttttcagaagctcaggcacaagcgcttgctcaggctcaggctcagtcgaaggca
caggcgcaagctcaggtgcaggctcatgcccatgctcaaatgatggcagctcacgcgcac
ctgcaagctcagttacaagctgctcaggggcttgcgttcaaccaggcacatcctggagga
atggggagtttgggttcacaatctccttctctttcaggagctggaagcatgggagccaaa
cgcttcccgcaaaaaccacctgctcgtccaccgagctttttaccttctaacgtggcctct
ccaatgcggccaatggatgcctcagctgctgctcgtaggaaaaagcagaagctcccagag
aaacagttacacgaaagagttgcagctattttgccagagtctgctctttacactcagctc
cttgagtttgagtcccgagtagatgctgccttgacaaggaagaaaattgatatccaagat
gccctaaagacaccaacttaccttcagaaaaccctccgtatatatgtcttcaacactttt
gctaatcagatccgcaccattcctaagaaaccaaatgcggagccacctacatggactctt
aagatcatagggaggattttggaggagggaatggacgctgaccaggcagcaatgatgcaa
aaagcaaacccttcttatccaaagttctccacatttttcaagagagttaccatcaccctc
gaccagaaaatataccctgataaccatttaattatatgggatagtgctcgttcacctgct
cctcacgaaggttttgaggtcaagaggaaaggagaccaagaatttactgcaagcataaga
ctagaaatgaattatatgcccgagaagtttaaactttcagcacctttgacagagctttta
ggtattgaggttgatactcgttccagaattatggctgcaatatggcattatgttaaggct
cggaagttgcagtgcccggatgacccctcttctttcaactgtgatccgccacttcaaaga
gtatttggggaaggcaaagtcaagttcacagcagtcacacaaaaaattacgccccatctg
tttcctccacagcccatacatctggagcacaggataaaactttcaggtaatagtcctgtc
ggaactgcatgctatgatgtattggtcgatgtacccttcccgatacagagagaattgaat
gcgttgttggccaacactgaaaagacaaaagagatagatgcttgtgacgaagcaatttgt
gctgcaataagaaagatccatgagcaccggaggagaagggcattcttccttggatttagt
cagtcacctgtagagtttattaatgcccttgtagattctcaaaacaaggatctgaagctt
gtttctggagaaggtagtcgcaatgcagaaaaagagcgccattctgatttctacaaccaa
ccatgggttgaagatgctgtcattcgctacctcaaccgaaagttaccagcagatgcctct
ggccacacatag
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