Salvia hispanica (chia): 125198948
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Entry
125198948 CDS
T09851
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125198948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125198948
Enzymes [BR:
shis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125198948
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125198948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
FtsK_SpoIIIE
SRPRB
AAA_22
ATP_bind_1
DUF1611
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
125198948
NCBI-ProteinID:
XP_047953119
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAYGGPAVAQTAPPGSSETVRQVKLDKECELRVEVGPNFPLRLRLLTGTAEIFGTEIPPE
IHLTFPPGHKFAVFTWYGATIEIDGITETDYTADETPMISYINVHAVLDARRNRAKGSPS
DSDDSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATP
IELPIDPVEGIPLDMPLVYFHGHVTPSANVELYKVLVKELAQVLERQFTGNVESRAAGMV
INTMGWIEGVGYELLLHAIDTFNASVVLVLGQEKLWSMLRDVLKSKPNVDVVKLQKSGGV
VSRNAKVRQKARGSRIREYFYGPANDLSPHSNTANFSDLLIYRIGGGPQAPRSALPVGAE
PVSDRLRVAPVSVNQDLHHLVLAVSFAKEPDEIMSSNVAGFIWVTDINFESKKITYLAPL
LEAFPVNI
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggcggccccgccgttgctcagaccgcgccgccaggtagctcggaaacagtg
aggcaggtgaagctggacaaagaatgcgagttgagagttgaagtcggtcccaattttcct
cttcgcctccgcttgctcaccggcaccgccgagatattcggaacggagattccgcccgag
attcacctcacgtttcctcccggtcacaaatttgctgtttttacctggtatggagctaca
attgaaattgatggtattactgaaactgattatacagctgatgagacgcccatgatcagc
tatatcaatgtgcatgccgtgctggatgctagaagaaatcgtgctaagggttcacccagt
gattctgatgattctcagggaccaagggttattgtcgtgggacctactgattctggaaag
agtacattgtcaagaatgcttctaagctgggcagctaaacagggatggaaacctaccttt
gtagatttagacataggccaaggatctataacaattcctggatgtatagctgcaactccg
attgagcttcctattgatccagtggagggaattcctcttgatatgcctctagtttacttc
catggccatgtaacccctagtgccaacgtagagttgtacaaggtattggtgaaggagctt
gctcaagttttggagaggcagtttactggaaatgttgaatctagagctgcaggcatggtg
attaataccatggggtggattgagggtgttggttatgagttactgctgcatgcaattgat
acgttcaatgcctcagttgtattggttttgggtcaggaaaagctttggagcatgcttaga
gatgttttgaaaagtaaacctaatgtagatgtggtgaagcttcagaagtcaggcggtgtt
gtctcgagaaatgcaaaagtccgtcagaaggccaggggctctaggatacgtgagtacttc
tatggccctgcgaatgatctttcccctcattctaacacagccaatttcagtgatttgtta
atctatcgtattggtggtggaccccaagccccacgctctgctctgccagttggtgcagaa
ccagtctcggatcgcttaagagtggctcctgttagtgtcaaccaagacttgcatcatctt
gtattagctgtctcgtttgctaaagaaccagacgaaatcatgtccagtaacgttgctggc
ttcatctgggtcactgatatcaacttcgaaagcaagaaaatcacgtacctagcgcctctg
ctggaagccttcccggtaaatatttga
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