Salvia hispanica (chia): 125199024
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Entry
125199024 CDS
T09851
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
shis03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125199024
03083 Polycomb repressive complex
125199024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125199024
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
125199024
Histone modification proteins
HAT complexes
HATB complex
125199024
HDAC complexes
Sin3A-HDAC complex
125199024
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
125199024
PRC2.2
125199024
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
125199024
Heterochromatin formation proteins
Other heterochromatin formation proteins
125199024
Chromatin remodeling factors
NuRD complex
125199024
NuRF complex
125199024
NuRF complex (fruit fly)
125199024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_HPS5
eIF2A
Beta-prop_DCAF12
Beta-prop_WDR19_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
125199024
NCBI-ProteinID:
XP_047953169
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MKERAAERTVEERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQIEQATYKNRQRLYLS
EQTDGSVPNTLVIANVEVVKARVAAAEHISQFNEESRSPFVKKSKTIIHPGEVNRIRELP
QNSNIVATHTDSPDVLIWDVESQPNRQPVLGATPSRPDLILTGHQDNAEFALAMCPTEPF
VLSGGKDKSVVLWSIHDHISSLAADQGAHKSPGSKGNLSNGKAGDGTAVEARGIFQGHGD
TVEDVQFNPSSAQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWNPNDVNLI
LTGSADNTVHMYDRRNLTSGGVGAPVHIFEGHSAAVLCVQWSPAKASVFGSAAEDGILNI
WDHAKIGKAGNDVGSGDSSYPPGLFFKHAGHRDKVVDFHWNAADPWTIVSVSEDGEKTGG
GGTLQIWRMIDLIYRPEEEVIAELDKFKSHLLTCSTSSSS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagagagcggctgagcgcacggtagaggagcgctacacgcagtggaagtcgctc
gtaccagttctctacgactggttggccaatcacaatctcgtttggccgtccctctcatgc
cgttggggacctcaaattgagcaagcaacatacaagaatcgtcaaaggctatatctttcg
gaacagacagatggcagcgttccaaacacactagtcatagcaaatgttgaagttgtaaaa
gctagggttgcagctgcagagcacatatcacagtttaatgaagaatcacgatcacctttt
gtgaagaagagcaagaccatcattcatcctggcgaggtgaatcgaatcagggaactgcca
cagaatagcaatattgtggcaactcataccgatagtcctgatgtactcatttgggatgtc
gaaagtcagcctaatcgtcaacccgttttaggtgccacaccatcacgccctgatttgata
ctgactggacatcaagataatgctgaatttgcactagccatgtgtcctacagaaccattt
gtgctctctggaggcaaggacaagtccgtggtgttgtggagcatccacgaccatatatct
tctttggctgcagatcagggggctcataaatctccaggttctaagggtaatttatctaat
ggcaaagctggtgatggaacagctgttgaagcacgtgggatatttcaggggcatggggac
actgtcgaagatgtccaatttaacccatcaagtgcacaggagttctgcagtgttggtgat
gattcttgcctgattctgtgggatgcaagaactggctcttctcctgttgtcaaggttgaa
aaagctcacaatgccgaccttcactgtgttgattggaatcccaatgacgtgaatctgatt
ttgacagggtctgctgataatactgttcatatgtatgatcgccgaaatcttacctcaggg
ggagtcggagcccctgttcatatttttgaaggccattctgctgcggtgctttgtgtccag
tggtctccggctaaagcatctgtcttcggcagtgctgcagaggatggcatcttaaatata
tgggatcatgcaaagatcggaaaggcaggaaatgatgttggatcgggagattcaagctat
ccccctggcttattttttaaacatgctggtcacagggacaaggtggttgattttcactgg
aatgcagcagatccgtggactattgttagcgtgtctgaggatggagaaaagactggtggg
ggaggcacactgcagatctggaggatgatcgacctaatttatcgaccagaagaggaggtg
atagctgagctggataagttcaaatctcatcttttgacgtgctccacttcatccagctcc
tga
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