Salvia hispanica (chia): 125200398
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Entry
125200398 CDS
T09851
Name
(RefSeq) cleavage stimulation factor subunit 77-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125200398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125200398
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125200398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_CcmH_CycH
TPR_16
NatA_aux_su
TPR_Slam
TPR_2
TPR_Edg1
BTAD
Motif
Other DBs
NCBI-GeneID:
125200398
NCBI-ProteinID:
XP_047954000
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MATETPQPNSLSLSDANADKLNVEAAERLANEALRLPMSDAVPIYEHLLANFPTSAKYWK
QYVEALMASNNDEATKQVFSRCLLNCLQVPLWRCYIRFIRKVNDKKGIEGQEETKKAFEF
MLNYVGSDIASGPVWMEYVAYLRSLPAQTTLEESQRMTTIRKLYQRAIVMPTHHVEQLWR
DYENFENSVSRALAKGLVTEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGTPKEEMQ
WVAWKKLLSFEKGNPQRIDNASANKRITFAYEQCLMYLYHYPDIWYDYAMWHAINGSQDS
AIKVFQRALKALPDSDMLKYAYAELEETRGAAQAAKKVYESLLGDGVNATALSHIQFIRF
LRRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDAKLAHNIFEAGLKRFMHEP
SYILEYADFLCRLNDDRNIRALFERALSSLPPDESVEVWKRFAQFEQTYGDLTSMLKVEQ
RRKEALCRMTENGESVLENSLQDVISRYSFMDLWPCSTKDLDHLSRQEWLFRGVNKKIEN
PTPVNGPSSADRTTADIQINSNVSGKVVYPDVSRMVIYAPGQKPGITTPVVSGVSSTLPN
GISGGAATINDTLKSLPPTLAVFVSNLPAVEGPSPDADFVVSICLQSNIPPASAKPSAPQ
QLPSGPVPSASDVSGSSKLRQTRDRQAGKRKGMERQDDDDTSTIQSQPLPKDAFKIRQLQ
KALGTSSRTGGASSRTGGTSSRTGGSASYGSGFSGDFSGSSG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggccactgagacaccacaaccgaactcgctctctctttctgatgcgaatgcagataag
cttaacgtcgaagctgctgaaaggcttgctaatgaggcactgcggttgccaatgtcagat
gcagtgcccatatatgagcatcttctggccaatttccccacttcggcaaaatactggaag
caatatgttgaggctctcatggccagcaacaatgatgaagcaacaaaacaagtttttagc
cgttgtcttttgaattgcttgcaagttcctctttggcgctgttacattcgcttcataagg
aaagttaatgataagaagggaatagagggtcaagaagagacaaagaaagcttttgaattc
atgcttaactatgttggatcggatatagcatctggccctgtatggatggagtatgttgca
tatctaagatcactacctgcacaaacaactttagaagagtcgcagcggatgactaccata
cgtaaactataccagagggctattgttatgcctactcatcatgttgaacaactttggaga
gactacgagaattttgagaattcagtgagccgtgcactggcaaaagggttggtgactgaa
tatcaaccaaaatataacagtgcaagggctgtttaccgagaacgtaagaagtatgttgat
gaaattgactggaatatgcttgctgttcctccttctggtactcctaaggaggaaatgcaa
tgggtggcctggaaaaagttattaagttttgagaaaggtaatccacagagaattgacaat
gcttcagcaaataaaaggataacatttgcttatgaacagtgcctcatgtacttgtatcat
taccctgatatatggtatgactatgccatgtggcatgccataaatggttcacaagactca
gctattaaagtttttcaacgcgcactgaaggctcttcctgattcggatatgcttaagtat
gcctatgctgagctagaggagactcgtggggcagctcaggcggcaaaaaaagtgtatgaa
agtcttcttggagatggcgtgaatgcaacagcattatctcacatccagtttatacgattc
ttaaggaggactgaaggagttgaagctgctcgcaaatactttctggatgcccgaaaatct
ccgaactgcacctaccatgtttatgttgcatatgcaatgatggcattctgtctagataaa
gatgcaaagcttgcacacaacatatttgaagcaggtctcaaacgttttatgcatgaaccc
agctacattcttgaatatgctgatttcttgtgccgcttgaacgatgatagaaatatccgt
gctttgtttgagcgtgctttgagctcacttccacctgatgaatctgttgaggtatggaaa
agattcgcccaattcgagcagacgtatggagatcttaccagcatgttaaaggttgagcaa
aggaggaaagaagctttatgccgtatgactgagaatggagaatcagttttagaaaattct
ctgcaagatgtcatttcgcggtatagtttcatggatctgtggccttgctcaacgaaggac
ttggatcatttatctcggcaagagtggctctttagaggtgtcaataagaagattgaaaat
cctactcctgtaaatggacctagctctgcagatcggactacagcagacattcaaattaat
tcaaatgtttctggcaaggttgtttatccagatgtatcaagaatggtgatttatgctcct
ggacaaaagcctgggatcacaaccccggtggtatcaggtgtttcaagcacattgccaaat
ggcattagtggaggagcagctacaatcaatgatacactgaaatcattacctccaacattg
gcagtctttgtatcaaatttgccagccgttgaaggtccatctcccgatgctgattttgta
gtatccatatgtttgcaaagcaacataccaccagctagtgcaaaacccagtgcacctcaa
caattgccatctggacctgttccaagtgccagtgatgtctctggttcaagtaaattaaga
caaacaagagataggcaagctggaaagagaaaaggaatggagaggcaagatgatgatgac
acgtctactatccaaagccaaccactacctaaagatgctttcaagatacggcaactgcag
aaagcgcttggcactagttcgcgtactggtggagctagttctcgtaccggtggaaccagt
tcgcgaactggtggctctgcatcatatgggagtggattttcaggcgatttctctggaagt
tcgggttga
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