Salvia hispanica (chia): 125200412
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Entry
125200412 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125200412
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125200412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125200412
03019 Messenger RNA biogenesis [BR:
shis03019
]
125200412
04121 Ubiquitin system [BR:
shis04121
]
125200412
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125200412
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125200412
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125200412
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125200412
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125200412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
zf-Tbcl_FmdE
Baculo_IE-1
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
125200412
NCBI-ProteinID:
XP_047954014
LinkDB
All DBs
Position
Unknown
AA seq
138 aa
AA seq
DB search
MSMSTAVRLCGECPMELNLELLYPNQPLLSECECGYQICFGCWNSLVARYKKGAVGTCPA
CGKRYDKARFVSRLPRPKPKAIAFTTVTVRGIPLKFANDATLMSNTCFGKYGKVTKVSIA
RKADGEILFYKPSICFEM
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgtcgacggctgttagactatgtggagagtgtccgatggagctgaatttggag
ctgttgtatcctaaccagccgctgctttcagaatgcgaatgcggttatcagatttgtttt
ggatgttggaacagcctagtagcacggtacaagaaaggtgctgtagggacttgtcctgcg
tgtggtaaacgctatgataaggccagatttgtttccaggctaccgaggccaaagccgaaa
gcgattgcatttactactgtaactgtgaggggaatacctctcaaatttgctaatgatgct
actttgatgagcaatacatgttttgggaaatacgggaaggtgactaaggtctcaattgca
agaaaagctgatggggaaattttgttctataaacccagtatatgctttgaaatgtga
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