Salvia hispanica (chia): 125200507
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Entry
125200507 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125200507
03015 mRNA surveillance pathway
125200507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125200507
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125200507
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125200507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
125200507
NCBI-ProteinID:
XP_047954102
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All DBs
Position
1:52328941..52333318
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AA seq
460 aa
AA seq
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MAEENETSSSTMNIKLESLVLDESNKQGALGLTNSTIEAVTSGDTPYTSAKRFEDLNLSP
ELLKGLYVEMKFEQPSKIQAISLPMILTPPYNNLIAQAHNGSGKTTCFVLGMLSRVDPDV
PQPQALCICPTRELAIQNMEVLLKMGRFTGITSELALPSDQANYMPIQKRPPITAQVIIG
TPGTISKWLQLKKLGLSKMKILVFDEADRMLAMSGFRDESIKIMKAIAKSTSNCQVLLFS
ATFNDVVKGFSSKIAGEIFQGQPNQMFVRKEELSLECVKQYKVHCPDELSKIMVIKDQIL
ELGERVGQTIVFVKSRNVASMLHQALVKHGYGVTTIQGALTIEDRDKIIKEFKKGLTHVL
IATDVLARGFDQEQVNLVINFDLPVQYGRYSEPDNEVYLHRVGRAGRFGRKGAVFNLLCL
DSDDMIMDKIEKHFNSQITEVAPWNSQEAFEDALRRARLL
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagaacgagacttcatcgtccactatgaatatcaaattggagtcattggtt
ttggatgagtccaacaaacaaggagcactcggccttacaaactccaccattgaagcggtt
acgtccggggacactccatatacctcggccaagagattcgaagacttgaacttgtcgcct
gaattgctcaaggggctttatgttgagatgaagtttgagcaacctagcaagattcaggct
atcagcttacccatgatcttaactcctccttacaacaatttaatagctcaagctcataat
ggatccgggaagaccacttgcttcgtgcttggtatgttgagccgagttgatcccgatgtc
cctcaacctcaggctctctgcatttgccccaccagggagttagccattcagaatatggaa
gtgcttctgaagatggggaggttcactgggataacctcagaattagccttaccatctgat
caagcaaactacatgccaatacaaaagaggccacctattacagcgcaagtaatcatcggc
acaccaggcacaatctctaaatggttgcagctcaagaaattgggtttgagtaaaatgaag
attcttgtgttcgatgaggcagaccgcatgttggcaatgagtggattccgagatgaatca
atcaagataatgaaggctattgctaaatccacttccaattgccaggtcctgttattctcg
gctacctttaatgatgttgtgaagggcttttcatccaagatagctggagagatctttcaa
ggacaacctaatcaaatgtttgtcagaaaggaagaactatctctggagtgcgtaaaacag
tacaaggttcattgtcctgacgagctttcaaagatcatggtgattaaagaccaaatactt
gaacttggagagagagtggggcagacaattgtgtttgtcaaatccaggaatgttgcatct
atgttgcaccaagctttggtcaaacatggctatggggtgactacgatccaaggtgctctg
actatagaggacagggacaaaatcataaaagagttcaaaaaaggtctgacccatgttcta
atcgcaactgatgttcttgctcgaggttttgaccaggaacaggtaaatttggtcatcaat
tttgatctacctgtgcaatatggtcgttattctgagcctgacaatgaggtttacttgcac
cgggttggtagagctgggcgctttggccgcaaaggtgctgtgttcaacttgctttgtctt
gacagcgatgatatgattatggacaagattgagaaacacttcaactctcagattactgag
gtggctccttggaatagtcaggaagcattcgaggatgctctacggcgagctaggctattg
tga
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