Salvia hispanica (chia): 125200758
Help
Entry
125200758 CDS
T09851
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125200758
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125200758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
125200758
NCBI-ProteinID:
XP_047954474
LinkDB
All DBs
Position
1:complement(48962454..48968768)
Genome browser
AA seq
674 aa
AA seq
DB search
MLSMSCFVKHRLSVLYIITLCILSLQKSSGNGLLQLEVQQDYVVLDNGLLQLTFTKPGGH
LIGISYNGLDNLLELHNPLLNGGFWDLNWSKPGTSGTRGEFDVANGTDFHVVVQNEEQVE
LSFSRKWDVSMLGQHAPLSIDKRFIMLRGSSGFYSYAIYQRDETMPAFYLNEARIALMLN
IEKFVYMAMSDDRQRRLPRPEDRVPPRGRELAFPEAVLLVNPIEPEFKGEVDDKYQYSCE
NKDNKVHGFICTDPTIGLWQISPSNEFRTGGPIKQDLTSHVNPTTLAMFVSTHYGGEDLV
VKFGDGEEWKKVFGPVFIYLNLVPDYTNDSTAFLWSDAKEQMKKEVEKWPYSFPVSEDFL
HVDQRGSVCGRLFAQDRYISEEKKIAAKGAFVGLAPPGKDGSFQKEAKGYQFWVNADDDG
YFKITNIRPGDYNIYAWVPGFIGDYRCDKDIVVAPGSSVDLGDLVYFPPRNGATLWEIGI
PDRTAAEFYVPEPDPMYINKLLVNLPSHRFRQYGLWQRYADLYPNQDLVYTLGTSDYKKD
WFYAQVTRKIGEGAYKATTWQIKFELDEIAESGKYTLRIALASATFSILEVRVNKNGLGE
ALFSSGLIGSDNTITRHGIHGLYWQFNVEIETSLLNKGDNTIYLTQARNFSALHGVMYDY
VRLEAPSLTSNKLA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgctctcaatgagctgttttgtgaagcatcggctctctgtattatacattatcacttta
tgcattttaagtttgcagaaatcatcgggcaatgggctacttcaattagaggttcagcaa
gattatgtggtgttagataatggattgctccaacttaccttcacaaaaccaggaggccat
ctcattggcataagctacaatggactcgacaacttgcttgagctccataatccattgcta
aatggagggttttgggaccttaattggagcaaacctggcacttcaggcacccgaggagaa
tttgatgttgctaatggaacagatttccacgttgtggtacaaaatgaggaacaagtagag
ctatccttctctagaaaatgggatgtttccatgctaggacaacatgcccctttgtctata
gacaaaaggttcataatgctgcgtggctcgtctggtttctactcgtacgccatctaccaa
cgcgatgagactatgccagcattctacttgaacgaggcccggatcgccctcatgctcaac
atagaaaagtttgtgtacatggccatgtcagacgacaggcagaggcgtctgccacgacca
gaggaccgtgtccctccacgggggagggagttggcattcccagaagcagtgctcctagtc
aatccaatagagcctgaatttaaaggagaagtggatgataaataccaatactcatgtgaa
aataaagacaacaaggtgcatggtttcatatgcactgatcccacaatagggttgtggcaa
atcagcccaagcaatgagttcaggactggagggcctatcaaacaggacctcacttctcat
gtcaacccaaccacattggccatgttcgtgagcactcactacggaggggaggatctagtg
gtgaagttcggagacggggaagagtggaagaaagtttttggaccagttttcatatacctt
aacttagtgcctgattatacaaatgatagtactgcttttttgtggagtgatgctaaagag
cagatgaagaaagaagttgagaaatggccatatagcttccctgtttcagaagatttcttg
catgttgatcaaagagggagtgtttgtggtagattatttgctcaagacaggtacatttct
gaggagaaaaaaatagcagcaaagggtgcttttgtggggctggctccaccaggaaaagat
ggatcatttcaaaaggaagcaaaaggatatcaattctgggtaaatgcagatgatgatggt
tatttcaaaattaccaatattaggcctggagattacaatatctatgcatgggtcccaggc
ttcattggtgattatagatgtgacaaagatatagttgtggcaccaggcagttcagtagat
ctgggcgatcttgtgtatttccctccaagaaatggagcaacactatgggagattggcatc
ccggatcgaactgcagcagagttctacgttcctgaacccgaccctatgtatatcaacaag
ctacttgtaaatctcccttcacacaggtttaggcagtatgggttgtggcagaggtatgca
gatttgtacccaaatcaagacttggtttacactcttggcactagtgattacaagaaagat
tggttttatgctcaagttacaagaaaaattggagagggtgcatataaagcaacaacatgg
cagataaagttcgaactggacgagattgcagagagtgggaaatacacgctgcggatcgct
ctagcatctgcaactttttccatactagaggtgagggtgaacaagaatgggctaggcgag
gcgttgttttcgagcggattaattggaagcgacaacacaataacaaggcatgggattcat
gggctttattggcaattcaatgtggagatagaaacttctcttctcaacaaaggggataac
acaatatacctcacacaagctagaaatttcagtgctttgcatggagtcatgtatgattat
gttcgacttgaggctccttctctcacctccaacaaactggcttga
DBGET
integrated database retrieval system
