Salvia hispanica (chia): 125201098
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Entry
125201098 CDS
T09851
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125201098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125201098
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125201098
Spliceosome [BR:
shis03041
]
Complex C
Other components
Step II factors
125201098
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
Flavi_DEAD
T2SSE
nSTAND_NTPase5
nSTAND3
Sigma54_activ_2
AAA_24
ABC_tran
AAA_16
TMEM247
SRP54
ATPase
AAA_7
Motif
Other DBs
NCBI-GeneID:
125201098
NCBI-ProteinID:
XP_047954979
LinkDB
All DBs
Position
1:12693493..12699430
Genome browser
AA seq
1089 aa
AA seq
DB search
MGVCADRDEKTPRESSRGQEKEHNGEYGRKRGRYDRSTRTPGMSDWDDGRWEWEESPRSD
GHDSSSRRCRPSPSPMLVGVSPDVQLVSPWLGGRTPNSSAASPWDSYAPSHTPIRARGKS
FRSSSSQYGGSSNQADSTNGENGPESTSADQNHEITERMRLEMEYNSDRAWYDREEGSTV
YDADGCSAFLGDEASFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLR
SGAVRGTEVQTEFDEEEERKVILLVHDTKPPFLDGRIAFTKQAEPVMPLKDPTSDMAIIS
RKGSNLVREIREKQSMNKSRQRFWELAGSNLGNILGVEKTADQIDADTAEVGDQGEIDFK
QDAKFAQHLKKGEGVSNFAKSKTLAQQRQYLPIFSIRDELLHVIRENQVIVVVGETGSGK
TTQLTQYLHEDGYTNNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGP
NTVIKYMTDGVLLRETLKDSDLEKYRIIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI
VTSATLNAQKFSDFFGNVPIFHIPGRTFPVQTLYSKTPCEDYVEGAVKQAMAIHITSAPG
DILIFMTGQDEIEATCYALQERMEQLASKKEAPKLLILPMYSQLPADLQAKIFENAEDGA
RKCIVATNIAETSLTVDGILYVIDTGYGKIKVYNPRMGMDALQVFPVSRANSDQRAGRAG
RTGPGTCYRLYTESAYLNEMLPSPVPEIQRSNLGNVVLLLKSLKIDNLLDFDFMDPPPQE
NILNSMYQLWVLGALNNVGDLTDIGWKMVEFPLDPPLAKMLLMGEQLGCINEVLTIVSML
SVPSVFFRPKDRVEESDAAREKFSVPESDHLTLLNVYKQWESNHCRGDWCNDHFLHVKGL
RKAREVRSQLLDILKTLKIPLTSCGFDWDVVRMAICSAYFHNSARLKGVGEYVNCRNGMP
CHLHPSSALYGLGYTPDYVVYHELILTAKEYMQCATAVEPQWLAELGPMFFSVKDSDMST
IEHKKKQKQEKTAMEEEMESLRKVQEDKERERKENEKKKRQKEQQQVSLPGLKLKKGAST
YLRPKRLGL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgggggtttgtgctgacagggacgaaaagacccctagagagtcatctcgtggtcaagaa
aaagagcacaatggagagtatgggagaaaaagaggtagatacgacaggtctacgagaaca
cctggcatgtctgattgggatgatggaagatgggagtgggaagaatccccacgcagtgat
ggtcacgattctagtagcagacgttgtcggccttctccatccccaatgcttgttggggtc
tcgcctgatgtacagcttgtttctccatggttgggagggcgtactcctaattcttcagct
gcgtctccttgggatagctatgctccttcccatactccaattcgggcacgtgggaagtct
tttaggtcttcaagctcccaatatggtgggagctccaatcaggctgactcgacgaatgga
gaaaatggtccagaaagcacatccgcagaccaaaatcatgagataacagaaagaatgcgt
ttagagatggaatacaattctgatcgtgcttggtatgatcgagaagaaggcagcactgtt
tatgacgctgatggctgctccgcttttctcggtgacgaggcatctttccagaaaaaagaa
gcagagttggctaagagactggtgagaagagatgggactaagatgactcttgcacagagc
aaaaaactttcgcagctcactgctgataatgctcagtgggaggatagacaacttttgaga
tcaggtgctgtcagaggaactgaggtgcagactgagtttgatgaggaggaagaacgaaag
gttattcttcttgtgcatgatacaaaacccccttttctcgatgggaggattgctttcacg
aagcaagctgagccagttatgccattgaaagaccctacgtcagatatggctataatatca
cggaagggctccaatctggttagggaaattcgtgaaaaacaaagcatgaacaagtccaga
caacgattttgggagcttgctggttctaatcttggcaatattcttggtgtcgagaaaact
gcagatcagattgacgcagatactgctgaagttggcgatcaaggtgaaattgatttcaaa
caggatgcaaaatttgcacaacatttgaaaaaaggagagggagtcagcaattttgctaaa
tcaaaaacgttagcccaacagcgacaatatttgcccatcttctctatacgagacgaatta
ctgcatgtaatccgcgaaaatcaagtgatcgtagtggttggtgaaactggttcaggaaag
acaacacaattaacacagtatcttcacgaagatgggtacacaaacaatggcattgttggt
tgcacacaaccaaggcgtgtggctgccatgagtgttgcaaaaagagtgagcgaagagatg
gaaactgaacttggtgataaagttggatatgccatacgttttgaagatgtcaccgggcct
aacactgttattaagtacatgactgatggtgtgttgctgagggagactctaaaagattca
gacctggaaaaatatcgcatcattgtgatggatgaagcacacgagcggtccctaagcaca
gatgtactttttggtatcctcaagaaagtcgtggccagacgtcgtgatttcaagctcatt
gtgacttctgctactctgaatgctcaaaagttttcagatttttttggaaacgtacctata
tttcacatccctgggaggacattcccggttcagacattgtacagtaagacaccttgtgaa
gattacgtcgagggtgcagtaaagcaggcgatggcgattcacatcactagtgctcctggt
gacatcctcatcttcatgaccggtcaagatgagattgaggcgacatgttatgctcttcaa
gaacgcatggaacaacttgcttccaaaaaggaagctccaaagctgctaatccttcccatg
tactcccagcttcctgctgacttgcaagcaaagatttttgagaatgctgaagatggagct
cgcaagtgtattgttgctacaaatattgctgagacatcgctgactgttgatgggatctta
tatgtcattgacacgggttatggtaagataaaagtctataacccccgtatgggtatggat
gctctccaagtctttcctgttagtcgtgctaattctgatcagcgtgctggacgagctgga
agaactgggccggggacttgctaccggctttatacagagagcgcttatctgaacgaaatg
ctacccagtccagtcccagaaatccagagaagcaacctggggaacgtggttttgctgctc
aagagtttaaaaatcgacaacctattagattttgacttcatggatcctcctccacaagaa
aacatcctcaactccatgtaccagctgtgggtgttgggtgctctgaacaacgtcggggat
ctgacagatataggttggaagatggttgagtttcccttggatcctccattggccaagatg
ctcctaatgggtgagcagctcggatgcatcaacgaggttctaacaatcgtgtcaatgctt
tcggtgccctccgttttctttcgacccaaggaccgtgtggaagagagcgatgccgcaagg
gaaaaattctctgtcccggaatccgaccacctcacactcctaaacgtgtacaagcaatgg
gaatctaaccattgccggggggattggtgcaacgaccatttcctgcacgtgaaaggtttg
cgcaaggctagagaggtaagatcccagctgctcgacattctcaagacactcaagatccca
ctcacgtcgtgtgggttcgactgggatgtagtgaggatggccatatgctccgcatacttc
cacaactcggctcgcctcaagggtgtcggggagtatgtcaactgcagaaatgggatgccc
tgccacctccatccgagcagcgccttgtacggcttgggatacactccagactacgtcgtt
tatcatgagctgatcctcacagcgaaagaatacatgcagtgtgccacggctgttgagccg
cagtggctggctgagctcggacccatgttcttctcggtgaaggactcggatatgtcaacg
atcgagcacaagaagaagcagaagcaggagaagactgccatggaggaggagatggagagt
ttgaggaaggttcaagaagataaggagagagagaggaaagagaatgagaagaaaaagagg
cagaaggagcaacagcaagtttccttgcctgggttgaagttgaagaaaggggcttcaaca
tatctcagacccaaaaggcttgggctataa
DBGET
integrated database retrieval system
