Salvia hispanica (chia): 125201167
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Entry
125201167 CDS
T09851
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125201167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125201167
03041 Spliceosome [BR:
shis03041
]
125201167
03036 Chromosome and associated proteins [BR:
shis03036
]
125201167
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125201167
Spliceosome [BR:
shis03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125201167
Complex B
125201167
Complex C
U2 SnRNP specific factors
125201167
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125201167
TFTC complex
125201167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
125201167
NCBI-ProteinID:
XP_047955097
LinkDB
All DBs
Position
1:52992833..52997240
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQSTGILCAINGSFSGGKSQEIAVARGKVLELLRPDDNGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYLVVGSDSGRIVILEYNKEKNTLDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVASSLCVMKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSATLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKVSNLFEEEIPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPGGIRHIREDGRINEWRTPGKR
TIVKVGSNRNQVVIALSGGELIYFEVDMTGQLMELAKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDTMDILSLQSVSSPPESLLFLEVQASLGGEDGADHPANLFL
NDGLQNGVLYRTVVDMVTGTLSDARSRFLGLRAPKLFSIVVRGRQAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGESFNETAIPLRYTP
RKFVVHPKRKLLLMIESDQGAFTAEEREAAKKESFEAAGMGENGNAEQMENGDDEENNNP
LTDEQYGYPKAESGRWVSCIRVLDPKTTQTTCLLELQDNEAAFSMCTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFKEDGKVLELLHKTQVEGVPLALAQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNSITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTTMGSLGAFLPFTSRDDVDFFSHLE
MHLRQEYPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIM
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctaacccttcagcaatccaccggaatcctctgcgccataaatgga
agcttttccggcggaaaatcgcaggaaatcgcggtggcgcgtggcaaagtcctggagctt
ctgcgccccgacgacaacggtaagctccagtctctcctctcagttgaaattttcggtgct
attcgctcattagctcaatttcgcctcactggtgctcaaaaggattacctagtggttggc
tccgattcggggcgcattgtaatacttgagtataataaagagaagaacacgctcgataaa
gttcaccaggaaacttttgggaaatcgggatgccgtaggatagttcctggccagtacttg
gccattgatcctaagggtagagctgtaatgattggtgcctgtgagaagcagaagcttgtt
tatgttttgaatagggatactgcagctaggttgacaatttcgtcgccgttggaagcgcac
aagagccatactatagtttactcaatttgtggggtggattgtgggttcgacaatccaatc
tttgcggctatagagttggattactctgaggcggatcaggatcccactggtcaggctgct
agcgaggcgcagaagcatttgaccttctatgagttggatttggggctaaatcacgtgtcg
aggaaatggtcagaacaggttgataatggtgctaatatgcttgtaactgttcccggtggt
ggggatgggccgagtggtgtgcttgtgtgtgcggaaaattttgttatatataagaatcag
gggcacccagatgttagggcagttattccgagacgtgaggacttgcctgcagagcgtggt
gtcctgattgtctcggctgctatgcataagcagaaatccatgtttttcttcctcttgcaa
actgaatatggagatatattcaaagtgacactggaccatgacaatgatagagttaaagag
ttgaagatcaagtattttgataccattccagtcgcatcttccttgtgtgtcatgaaatct
gggtttctgtttgctgcatcagagtttggaaaccatgccttgtatcagtttcaggcgatt
ggtgatgatcctgatgtggaggcttcatctgctacactgatggaaaccgaggaaggtttc
cagccggtgttcttccagcctagaaagctgaagaatctggttcggatcgatcaaattgag
agcttgatgcctattatggatatgaaagtctccaatctattcgaggaagaaatccctcaa
atattttcactttgtgggcgtggacctcgttcttctctgcggattctgagaccaggtttg
gctattagtgaaatggctgtttcacaattacctggtgtcccaagtgctgtatggactgtc
aaaaagaatgtgaatgatgaatttgatgcctatatcgttgtctcttttgcaaatgccact
cttgtactttccattggtgagactgttgaagaagttagtgatagtggatttcttgacact
acgccttctcttgctgtttctttgattggggatgactccttgatgcaagtccacccaggt
ggtatcaggcatatcagagaagatgggcgtatcaatgaatggaggactccaggaaagaga
acaatcgttaaggttgggtctaatagaaatcaggttgtcattgctctgagtggaggggag
cttatatattttgaagttgatatgacagggcagctgatggagcttgcaaaacatgaaatg
tcgggagatattgcctgtttagatattgccccagtcccagaaggacgacagagatctcgc
tttctggctgttggatcttatgacaatacaatccgcatcttgtctttagaccccgatgac
acaatggacattttgagtctccaaagtgtttcatcacctccggagtctctactttttctt
gaagttcaggcttcattaggaggtgaggatggagcagaccatccggctaacctctttctc
aatgatggtttgcaaaatggagttttatacaggacagttgtggatatggtgactggcacg
ctctcggatgctcgctctcgattcttaggtctcagagcacctaagctcttttctattgtt
gtgagagggcgacaagctatgctttgcttgtcaagtagaccttggcttggctacatacac
caaggtcacttccttcttacgcctctgtcatacgagacacttgaatatgctgcctccttc
tcctcagaccagtgtgcagaaggtgttgtagctgttgctggggatgccttgagggttttc
accatagagagattaggagaatcatttaatgaaactgctataccactgaggtatacacca
aggaagtttgttgttcatcccaagcgaaagcttttgcttatgatcgagagtgatcaggga
gcattcactgcagaagaacgtgaagctgcaaaaaaggaatcattcgaggctgctgggatg
ggagagaacggaaatgcagagcagatggagaatggtgatgacgaagagaacaataatcca
cttacggacgaacaatatggttatcccaaggcagagtctggaaggtgggtttcttgtatc
agagttttagacccgaagacgacacagacgacctgtttacttgagcttcaggataatgaa
gcagcatttagtatgtgcactgtcaattttcatgacaaggagtatggaactcttttggct
gtcgggacagcaaaaggcctgcagttctggcccaaaagatcctttgaggctggatatatt
catatatataggttcaaggaagatgggaaagttcttgaacttctgcataaaacacaagtg
gaaggtgtccctcttgctttggcccaatttcaaggaagattgctggctggaataggacct
gtgcttagattatatgatttggggaaaagaagattactaaggaagtgtgagaataagttg
ttccctaattcaattacatctatccagacataccgtgatcggatctatgttggtgatatg
caagagtcattccactactgcaagtatagacgtgatgaaaaccagctgtacatattcgct
gacgacacagttcccagatggcttactgccgcacaacatgtagattttgacaccatggcc
ggggcagacaaatttggaaatgtttactttgtgcggttgccacaagatgtctcagatgag
atcgaagaagatccaactggtggtaagataaaatgggagcaggggaagctgaacggggca
ccaaacaaagtggaggaaatagtacaattccatgttggcgatgtggtcacttgcttgcag
aaggcatctttaattccaggaggtggggagtgcctcatttacgggacgacaatggggagt
ttgggggcattcctcccatttacatcacgtgatgacgttgatttcttctctcatttggag
atgcacctgcgacaggagtacccacctttgtgtggcagggaccacatggcctatcgatct
tcctacttcccggtgaaggatgtgattgatggagacttgtgtgaacagttcccaactttg
cctatggatatgcaacggaaaattgcagacgagctcgatagaactcccggggagatcatg
aagaaactggaagagataagaaacaagatcatttga
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