Salvia hispanica (chia): 125201241
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Entry
125201241 CDS
T09851
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125201241
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125201241
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
125201241
NCBI-ProteinID:
XP_047955234
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All DBs
Position
1:complement(27050638..27056919)
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AA seq
1157 aa
AA seq
DB search
MAEKEQTTKTTPLFAAFGGESLPSAADSSSDKATAQWLQNSSFNTDLSVINDAVSKYKLT
YDEESEEEEEDNAEGIDARKRPPQYEMVPSEASASSDEDRGRKSKKKRKRRKGESSGSRA
SFSYAATLSSNSRKPGVEKWAASSSTANEKEYYFDSRGDRDNLAFGSIYRMDVARYKLCN
SKKLSEQNFIQWNKRARRLEGDNDVDALDNKLRSGGRYWSAKYAAIERHKDLKRMRVLAP
KSNMKSSVADYIPLVDEGSDSGLASSAEVVQESWEDEVLRRTREFNKMTREHPQDESLWL
SFAKFQDKVASKQSHKGARLQILEKKISILEKATEINPESEDLLISLMKAYQSRDSTDVL
IRRWEKILTSNSGSCKLWKEFLRVLGGEFSRFKVSELRKMYANAIQALAGACIKQQRQAH
PSDSATSIDPAIIQLELGLVDVFIGLCRLEWQAGYQELATALFQAELEYSLFSPFVLSEQ
SKQRLFQHFWSSNGARIGEDGALGWLTWIEKEEEQRQMLIREEEASDAVEEGGWTGWFDP
SSETTEIELPGATTEEQKIGEELNDESDTNDVEQKDDVESLLKALGIDAAAEADVTIKDT
ETWTKWSKAETTRDFDHWMPLRANSDQVSRDVVTAEAEDDEQILSIIMYEDVSDYLFSLK
SEEARFSLVSQFIDFFEGRIAQWTCTNSSSWVAKTLSLESPPYSLLEDLGKVHDVLVRKS
TNLRSFSLELLLESSDDLNMRTNMMKFLRNAILLCLKVFPQNYILEEAALVAEELSNTRM
NSTSYSVTPCRALAKTLLKNNRQDVLLCGVYAKREAFYGNIEHSRKIFDMALSSVEGLPP
ELRSNASLLYFWYAEVELANNSSKSSDSSSRAIHILSCLGNGAKYTPFKGQLSSVQQLRA
RQGFKDRIRMLSSTWAHGVTDDHSAALICSAALFEELTSGWACALEILENSFTMVLPERR
RNSRQLEFLFTYYVRMLDRNHMELKLSGIWESIVKGLQLYPFSPQLHYALVEISHLYTSP
NKLRWTFDDHCRKTPSTITWLYALAFEMSTGGSQHRIRGLFERALEDDKLHSSVILWRCF
IEYERSVACNIPGAKRVFFRAIHACPWSKKLWLDGFLKLNSVLSVKELSDLQEVMREKEL
NLRTDIYEILLQDEMEA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaaggagcaaactaccaaaacgacgccgctcttcgctgctttcggcggcgaa
tcgctcccctccgccgctgatagtagtagcgacaaagccacagcgcaatggctgcagaac
tccagcttcaacaccgacctctccgtcataaatgacgccgttagcaaatacaaactcacc
tacgacgaggaatcggaggaagaagaagaagacaacgcggaaggaattgatgccaggaaa
cggccaccgcagtacgagatggtgccttcggaggccagcgcttcttccgacgaagatcgc
gggaggaagagtaaaaagaagaggaaaaggagaaagggggaatcgagcggatcgcgtgcg
tcgtttagctatgcggcaacactatcctctaattcgaggaaaccgggagttgagaaatgg
gcggcgtcttcttctactgctaatgagaaagagtactactttgattcccgtggagaccgc
gacaatttagcctttggtagcatctacagaatggatgttgctcgttacaagctttgcaat
tctaagaaactctctgaacagaactttatccagtggaataaaagagctcgtcggctggag
ggggataatgacgttgatgcgttggataataaacttaggtctggggggcgctattggtcg
gctaaatatgctgctattgagcgtcataaggacttgaaacggatgcgggttcttgctcct
aaaagtaacatgaagagctcggttgctgattatatccctttagttgatgaaggttcagac
agtggactggcatcgagtgccgaagttgttcaagagtcctgggaagatgaggtcttgcgg
agaacaagggagttcaataagatgacgagggagcatccacaggatgagagtctatggttg
tcatttgcgaagtttcaagacaaggtggcaagtaagcagtctcacaaaggtgctcgtctt
cagatcctcgagaagaaaatcagtattctggagaaagcaactgagattaatccagaaagt
gaagatttacttatttctcttatgaaagcttatcagagcagagatagcactgatgtgctg
attaggagatgggagaagatacttacatctaattctggaagttgcaagctgtggaaagaa
tttttacgggttctcgggggtgagttttccagattcaaggtttccgagctaaggaaaatg
tatgccaatgctatccaagccttggctggtgcttgcataaagcagcagaggcaggctcat
ccatccgacagtgcaacatcaattgatccggctattattcaactggagcttggtttggtt
gatgttttcattggtctttgccgcctcgagtggcaggcaggttaccaagaactggcaact
gctttatttcaagcggagcttgagtatagtttgttttctccatttgttctctcggaacaa
agtaagcaaagattgtttcagcacttttggagtagtaatggtgccagaatcggggaggat
ggagcccttggatggttaacttggatagagaaggaggaagaacagaggcaaatgcttatc
cgtgaggaggaggcctcagatgcagttgaggaaggtggttggacaggttggtttgaccca
tcatctgagactacagaaatcgaattgccaggagctactactgaggaacagaagattggt
gaggaattgaatgatgaatctgatacaaatgatgttgagcagaaggatgatgttgaatct
ctgcttaaagcacttggcattgatgccgctgctgaagctgatgtaacgattaaagataca
gaaacatggactaaatggtcaaaggccgaaacgacaagagattttgatcattggatgcct
cttcgtgcaaattctgatcaggtttctcgtgatgttgtcactgccgaggctgaagatgat
gaacaaattttgagtataataatgtatgaagatgtgagtgattacttgttctcactcaag
tccgaggaagcccgattttctctcgtgtcccagtttatagatttctttgaggggaggata
gctcagtggacttgcacaaacagttcaagttgggttgcaaagacacttagtttggaaagt
cccccttattctcttctagaggatctaggaaaagtgcatgatgttctggtgaggaagtcg
accaacctaaggagttttagtttggagctacttttagaaagttcagatgacttgaatatg
aggactaatatgatgaaatttctccgaaatgctatcttactttgtttgaaagtgtttcca
caaaactacatcttggaggaagctgctcttgttgctgaggagttatcaaatacaaggatg
aattcaacaagttattctgtgacaccatgtcgagctctggcaaagactttactgaaaaat
aataggcaggatgtattgctatgtggagtttatgctaaaagagaagctttctatgggaat
attgagcattccaggaagatttttgacatggccctatcatcggttgaggggcttccaccg
gaacttcggtcaaatgcatctctgttgtacttctggtatgcagaagttgagcttgcgaac
aattcttccaaaagttctgactcctcgtcccgtgcaatacatatcttatcttgcttaggc
aatggagcaaaatatactccatttaaaggacaactgtcaagtgtccaacaacttagagcc
cgccaggggttcaaagatcgtataagaatgttgagttcaacatgggcacatggtgtcaca
gatgatcattctgctgctcttatctgttcagcagctttatttgaagagttgacgtctgga
tgggcctgtgcgttggaaattctggaaaactcttttacaatggtgcttccagagaggagg
agaaacagcaggcaacttgaattcttgtttacctattatgtgaggatgctcgacagaaat
cacatggaacttaagctttcaggaatatgggaatctattgtgaaaggattgcagttatat
ccttttagcccgcaacttcactatgctttagttgaaatcagccatctctacacatcaccc
aataaattgcggtggacttttgacgatcactgccgaaaaaccccgtctaccatcacatgg
ctctacgcattggcatttgagatgagcaccggaggttcccagcatagaatacgcggactt
tttgaaagggcattggaggatgacaaattgcacagttcagtgattctctggcgttgtttc
atcgaatacgagaggagtgtagcatgcaatattccgggagctaaaagagtgttctttcgt
gcaatacatgcatgcccctggtcgaaaaagctgtggcttgatggttttctcaaactgaac
tcagtattgtctgtgaaagagctgtcggacctccaagaagtcatgcgagaaaaggaactc
aatctgaggactgatatatacgagattctattgcaagatgagatggaggcttag
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