Salvia hispanica (chia): 125201328
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Entry
125201328 CDS
T09851
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
shis
Salvia hispanica (chia)
Pathway
shis04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125201328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125201328
Membrane trafficking [BR:
shis04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
125201328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
125201328
NCBI-ProteinID:
XP_047955347
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Position
1:complement(12020669..12027798)
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AA seq
791 aa
AA seq
DB search
MISDGVVDDEEKWLSAGIAGLQQNAFHMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
YYELYMRAFDELRKLEIFFKEETSRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSK
EAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFV
LQNFTEMNKLWVRMQHQGPAREKDKRGKERGELRDLVGKNLHVLSQIEGVDLEMYKETVL
PRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLNACPQLQSSVDVETVLSRLM
ERLSNYAASGSEVLPEFFQVEAFAKLNNAIGKVIEAQENMPIAGVVTLYASLLTFTLQVH
PDRLDYIDQILGACVKKLSGREKLNDSKATKQIVALLSAPLEKYKDIDTALNLSNYPRIM
ECLNDGTHKEMANVIVQNIMKNKTCISTAEKVDALFELIKGLIRDLDGDTHDELDEDFIE
EQNSVARLIQILHSDDPEEMLKVIETVRKHILTGGRKRLPYTVPPLIFSSLKLVRRLEKQ
EENVSGDEASTTPKKIFQLVTQTIEALTSIPVPELALGLYLQCAEAANDCDLEPVAYEFF
TQAYILYEEEITDSKTQVTSIHLIIGTLQRMHVFGVENRDALTHKATGYSAKLLKKPDQC
RAVYTCSHLFWLDDHDSIRDGDRVLLCLKRALRIANAVQQMANATRGSSGSALLFIEILN
KYLYFYEKGVSQITVESIQDLIKLIRNEMQGDASPSSDPAADAFLASTLRYIQFQKDKGG
AVGDKYMLITD
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgatcagtgacggagtcgtagacgacgaagaaaaatggctgtcagctgggatcgccggc
ctgcaacagaatgccttccacatgcatcgcgctctcgattctaacaatttgaaggatgct
ctcaagtactccgctcagatgctctccgagctccgcacttccaggctctcccctcacaaa
tactacgaactttatatgagggcttttgatgaattaaggaaattggagatcttcttcaag
gaggagactagtcgcggttgctccattgttgagctctatgaactcgtgcagcatgctgga
aacatattgcctagactatatctgctctgtactgttggctctgtatacataaagtctaaa
gaagcaccagcaaaggatgttctcaaagatctggtagaaatgtgtcgcgggatccaacat
cctctgcgtggtctttttctaaggagttacctatctcaagtcagtagagataagttgccg
gacattggatctgaatatgagggggatgctgatactgtcatggatgctgttgagtttgtg
ctccaaaacttcacagaaatgaacaaactatgggttagaatgcaacaccagggacctgct
agggaaaaggataagaggggtaaagaaaggggtgagctacgtgatctggttggtaagaac
cttcatgtcctcagccagattgagggtgttgatcttgaaatgtacaaagaaactgtgctt
cccagagtgttggagcaagttgtcaactgcaaggatgaacttgcccaatattacttgatg
gattgcataattcaagtcttcccagatgaatatcacttgcagacacttgaaacattattg
aatgcctgccctcaacttcagtcttctgttgatgttgaaacagtgctttctcgactaatg
gaaagactctcaaattatgctgcttctggttcagaagtgttacctgaattttttcaagta
gaagctttcgcaaaactgaataatgccattggcaaggtgatagaagcacaagaaaatatg
cccattgctggagttgttactttatatgcgtctcttttgacatttacactacaagttcat
cctgatcggcttgattatattgaccagattctgggagcatgtgttaagaaactttcagga
agagaaaagcttaatgatagcaaagcaacaaaacagattgttgcacttttaagtgctcca
cttgagaaatataaggatatagacactgcattgaacctgtctaattatccccgcatcatg
gagtgtttaaatgatggaacacataaagagatggccaatgtcattgtacaaaacataatg
aaaaacaagacttgcatatcaactgcagagaaggtggatgcgctatttgaattgataaag
gggcttatcagagatcttgatggagatactcatgatgagcttgatgaggacttcatagag
gaacagaattccgttgcccgtcttatacaaatactgcacagtgatgatcctgaagaaatg
ttgaaggttattgaaactgtgaggaagcacattttgactggagggcggaagcggcttcct
tatactgttcctccacttatatttagttctctaaagctggtacgtcgactggaaaaacaa
gaagaaaatgtctctggtgatgaggcatctacgacaccaaaaaagatctttcaattagtg
acacagacaattgaggcactgacaagtattccggttcctgaactggctctggggttatat
ttgcaatgtgctgaggctgcaaatgactgtgacctcgaacctgttgcatatgaatttttt
acccaagcttatatattgtatgaagaagaaattacggattcaaaaactcaggtgacttcg
atacacttgataattgggacactccaaaggatgcatgtctttggtgttgaaaatagagat
gcattgacacacaaggccacagggtattctgcaaagctgttaaagaaacccgaccagtgt
agagctgtttatacttgctcacacctgttctggctcgatgaccatgatagtatcagagat
ggagacagggtcttgctttgcctgaagcgcgcactaagaatcgcaaatgctgttcaacaa
atggcaaacgcaactagaggcagcagcggatcagctttgctatttatagagatactaaac
aagtatctctacttctacgagaaaggggtctcgcagattactgttgaatcaattcaggac
ctaattaaattgatcagaaacgagatgcaaggtgacgcttcaccatcatcagatccagca
gcagacgccttccttgcaagtacattacggtatatacagttccagaaggacaaaggcggc
gctgtgggggataaatacatgctcattacagattag
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