Salvia hispanica (chia): 125201636
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Entry
125201636 CDS
T09851
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125201636
09123 Folding, sorting and degradation
03018 RNA degradation
125201636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125201636
03041 Spliceosome [BR:
shis03041
]
125201636
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125201636
mRNA cycle factors
Stress granule specific factors
125201636
Spliceosome [BR:
shis03041
]
Complex C
Other components
Complex C specific factors
125201636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RBD_DEAH11
RRM_Nup35
RRM_3
RRM_7
RRM_YTH1
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
125201636
NCBI-ProteinID:
XP_047955782
LinkDB
All DBs
Position
1:complement(52566306..52569671)
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AA seq
636 aa
AA seq
DB search
MAATAIPPPALMAAAPAVAVPGAVFPNSSLYVGDLDAAVDESKLYDLFSHVAPVASVRIC
RDVTRRSSLGYAYVNFNSPIDASNAKDALNFTHVNGKPIRIMYSHRDPSLRKSGYANLFI
KNLDQAIDTKALFETFSAFGTVLSCKIAVDHNENSRGYGFVQFDKEEAAQNAIQRLNGML
INDKKVYVGIFVRRQERNRGKGSPKFTNVYVKNLPESATDESLRKMFEKFGGITSAVIMR
DGNGKSKCFGFVNFESPDSAAAAVENLNGSSSDDKVLYVARAEKKAEREAELKSQFEQER
NSRFEKLKGANLYLKNLDDSVNEERLKELFSEFGNITSSKLVRDLNGLSKGSGFVAFASP
EEATKALNEMNGKIIGRKPLYVAVAQRKDERKAWLQAHFAQTRSSGSMSPLMPGFHSTSP
RLAHQQVYFGQVGPGLIPQTPGYGFQQQHMPALQPGVPSNFVLPFQLQQQTQPGPRPDPR
RGANSPQPQQQVYGNQGFNRYMPNARNGVNPSMVPQGLMGPMMPLPLDASSPTSGASLDV
PISLPLPRPTLASALASASPENQRMMLGEQLYPLVERLERNHAGKVTGMLLEMDQTEVLH
LIESPDALKKKVVEAMNVLRLASSGSDISDQLGSLS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggcgattccgccaccggcgttgatggcggcagctccggcggtggccgtg
ccgggcgctgttttccctaactcgtcgctctacgtcggcgatctggacgccgcggtggac
gagagcaagctctacgatctgttcagccacgtggcgcccgtcgcctccgtcaggatttgc
agagatgtcacgcgccgatcgtcgctcggatatgcctacgtcaatttcaattctccgatc
gacgcttctaatgcaaaggatgctttgaatttcactcatgtcaatggaaagccaatccgg
atcatgtactctcacagagatcctagcctccggaagagtggatatgctaatctcttcatc
aagaatttggatcaagcaatcgacacaaaggcgctcttcgagaccttctctgccttcgga
accgtgctctcttgcaagatcgcggtcgaccacaacgagaactcgaggggctatggcttc
gtgcagttcgacaaggaggaagccgcgcaaaacgccatccaaaggctgaatggcatgctg
ataaacgacaagaaagtctacgtggggatttttgtgcgtcgacaggagagaaaccggggg
aaaggatcgcccaaattcacgaacgtttacgtgaaaaacctgcccgagagtgccacggat
gagagccttaggaaaatgttcgaaaagtttggagggatcactagcgcggtgatcatgaga
gatggcaatgggaagtcgaaatgctttggcttcgtgaatttcgagagccctgactctgca
gctgctgcagttgagaatctgaacggatcctcatcggatgataaggtgttgtatgttgca
agggctgagaagaaggcggaaagagaggcggaactcaagtctcagttcgagcaggagagg
aacagtcggttcgagaaattaaagggtgctaacctttatttgaagaatcttgatgatagt
gtgaatgaagagaggctgaaggaactattttcagagtttggaaacattacatcaagcaag
ctcgtgcgtgatttgaatggactgagcaagggctcgggttttgtggcattcgcgagtcct
gaagaagcgaccaaagctttgaatgaaatgaatgggaagattattgggaggaaaccttta
tatgttgcagtggctcaaagaaaagatgaaaggaaagcttggttgcaggcacattttgct
cagacgcgatcctctggcagcatgtctccacttatgccggggttccactccacctcaccg
aggcttgctcatcagcaagtttacttcggtcaagttggtcccgggctcatccctcagacg
cccgggtatggatttcagcagcagcacatgcccgctctacagccgggagtcccatcaaat
ttcgtcttgccattccaacttcagcagcaaactcagcccggtccccgcccggatcctagg
agaggtgcaaattctccacagcctcagcaacaggtgtacggaaatcaaggtttcaacaga
tacatgccgaatgcgcgaaacggcgtcaacccctccatggttccacaaggcctaatggga
ccaatgatgccactacctctcgatgcatcatctccaacatcgggagcttctctagacgtc
ccgatatcactaccattgcctcgaccaaccctcgcctcagccttggcgtctgcatcaccg
gaaaatcagcgcatgatgctcggcgaacaactctaccctctggtcgagcgtcttgagcgc
aaccacgcgggaaaagtcactggcatgctgctggagatggaccaaactgaggtgcttcac
ctgatagagtcaccggacgccctcaagaagaaagtcgtcgaggcgatgaacgtgctccgt
ttggcatcgagcgggtccgacatcagcgatcaacttggatccttgtcttaa
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