Salvia hispanica (chia): 125201755
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Entry
125201755 CDS
T09851
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125201755
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Other 90S particles
125201755
Pre-60S particles
Other pre-60S particles
125201755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_RFWD3
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR19_1st
WDR54
Beta-prop_WDR75_2nd
Beta-prop_VPS8
TMEM215
Motif
Other DBs
NCBI-GeneID:
125201755
NCBI-ProteinID:
XP_047955950
LinkDB
All DBs
Position
1:complement(27310994..27315184)
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AA seq
486 aa
AA seq
DB search
MIAAISWVPKGFANSVPTAADPPSKEEIEEMVKSGLLDTREGSEYDEDMSEDELGQDDDL
SNALSAANALGKAIKTGNPEADSLTEALKELDMDNYDEEDDGAELFGSSNLYYASNKMDP
YLKDGDEDSEEEEDMTIKPEDGIIVCARNEDDVSHLEVWILEDPSDVNSNMYVHHDVVIP
AFPLCTAWLDCPIKGGEKGNFIAVGSMEPAIEIWDLDIMDEVQPSATLGGVAEKKKKGKK
KSIKYKDGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVATETCNLTLDHHTDKVQSV
AWNHFAPQVLLSGSFDHTVVMKDGRQPEHSGFKWSVAADVESVAWDPHTEYSFVVSLENG
MVSGFDIRNASSDPSSQPKPRFTLHAHDKAVCAITYNSLVPNLLATGSMDKMVKLWDLSS
EPSCIASNNPKAGAVFSISFSVDCPFTLAVGGSKGKLQMWDILSDAEVSRRYGKYAARSK
PPPPSS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgattgctgcaatctcctgggttccgaaaggattcgctaattcagtacccaccgcagca
gaccctccttccaaagaagaaatcgaagagatggtaaagagtggccttttggatactcgc
gaagggagtgaatatgatgaggatatgagtgaggatgagctcggtcaagatgatgatctt
tctaatgcattatctgctgctaatgcacttggaaaagctatcaagactggaaacccggag
gccgacagcttgacagaagcactgaaggagctagacatggataattatgatgaagaagat
gatggtgctgagctgtttggatcttccaacttatactatgcaagtaacaaaatggaccct
tatttgaaggatggtgatgaagactctgaagaggaagaggatatgaccataaaaccagag
gatggtatcatagtgtgtgccaggaatgaggatgatgtcagccatctcgaggtttggata
ttggaagacccttcagatgttaattcaaacatgtatgtacaccatgatgttgtcattcca
gcgtttcccctttgcacagcttggcttgattgtcccatcaaaggtggagaaaaaggaaac
ttcattgcggttgggtcaatggaaccagctattgagatatgggaccttgatataatggat
gaagtccagccatctgctacattaggtggcgttgcggaaaagaagaaaaaaggaaagaag
aaatctattaaatataaggatggcagccacacagattcagttcttggacttgcttggaac
aaggagtataggaatattcttgcaagtgcaagtgcagacaaattggttaaaatctgggat
gtggcaactgaaacttgtaacctgactttggatcaccatacagacaaggttcaatcagtt
gcgtggaatcattttgcaccgcaagttcttctcagtggatcttttgatcacactgtggtt
atgaaagatggccggcaacctgaacatagtggatttaagtggtctgtagctgctgatgtt
gagagtgtggcatgggatccacacacagagtactcatttgtggtcagtctggaaaatggc
atggtttctggctttgatatccgtaatgctagctctgatccgtcatctcagcccaagcca
cgtttcactctccatgcgcatgacaaagcagtttgtgcaatcacatataatagcttagtt
ccaaatcttcttgctactggctcaatggataagatggttaagctctgggatttgtcaagc
gagccgtcatgtattgcttccaacaatccgaaagctggtgccgtgttttccatttcattc
tctgtagattgtccttttacactggccgttggaggttctaagggaaaattgcagatgtgg
gatatattatctgatgctgaggtttctagaagatatgggaaatatgcggcccgatccaag
cctccccctccgagctcttga
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