Salvia hispanica (chia): 125202036
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Entry
125202036 CDS
T09851
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
shis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125202036
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125202036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125202036
04121 Ubiquitin system [BR:
shis04121
]
125202036
03400 DNA repair and recombination proteins [BR:
shis03400
]
125202036
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125202036
Spliceosome [BR:
shis03041
]
Complex B
Other components
Prp19 complex
125202036
Complex C
Prp19-CDC5 complex
125202036
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
U-box type E3
125202036
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125202036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF12
RMC1_N
PROPPIN
zf-Nse
Beta-prop_DCAF4
DUF1635
U-box
KNTC1_N
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
125202036
NCBI-ProteinID:
XP_047956302
LinkDB
All DBs
Position
1:complement(4027056..4033474)
Genome browser
AA seq
526 aa
AA seq
DB search
MNCSISGEVPEEPVISKSSGLLFEKRLIERYVSDFGKCPVTGEPMTIDDILPVNSGKIVK
PRPMQTASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVISRLKK
ERDEARELLAQAERQIPMSVAAQDAVNAAALSNGKRAIEDGEMGPDGKRVRQGISNSIIS
ELTDCNAALSQQRKKRQIPSALASIDAVERYTQLTVNPLHKTNKPGILSMDILYSKDLIA
TAGADSNAVVFDRSSGQVVSTLSGHSKKVTSVKFAAEGEIVVTGSADKTVRVWRGSEGGD
FDCRHILKDHTAEVQAVTVHATNNYFVTASLDSTWCFYELSSGLCLTQVEDTSGSAEGYT
SAAFHPDGLILGTGTSRGLSKIWDVKSQSNVASFEGHMGAVTAISFSENGYFLATAAHDG
VKLWDLRRLKNFRTLSPYDENTPTHSVEFDHSGSYLALGGSDIRVYQVANVKSEWNCIKT
FPDLSGTGKILSVKFGPDAKYVAVGSMDRNLRVFGLPEENDDQSET
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaattgttcaatttctggcgaggtgccggaggaacctgttatctcaaaaagttctggt
ctcctcttcgagaagcgcttaatcgagcgctatgtctcggactttggtaaatgtcccgtt
actggagagcctatgacaattgatgatattttacctgtcaattctgggaagatagtgaag
ccccgaccaatgcagactgctagtatccctgggatgctgggaatgtttcagatagaatgg
gatggcttgatgctatcaaattttgcattggagcaacaattacatactgccaggcaagag
ctgagccatgccttgtatcagcatgatgcggcatgtcgtgttatttcaaggctgaagaaa
gaaagagacgaggctagagagttattggcacaagctgaaagacaaatacccatgtcagtg
gctgcacaagatgcagtgaatgctgctgctttaagcaatgggaaaagagcaatcgaggat
ggtgagatgggtcctgatgggaaaagggttcgtcaaggaatctcgaatagtatcatttct
gagcttacagattgtaatgctgccctttcacaacaaaggaaaaagcgacagataccatca
gcattggcttctattgatgctgtggagaggtacactcaactcactgtaaatcctcttcat
aaaaccaacaaacctgggattttgtcgatggacatcttgtactccaaggatctcattgcc
actgctggggctgactcgaatgctgtagtttttgatagatcgtcaggccaagtagtatct
actctcagtggccactcaaagaaggttacaagcgtcaaatttgctgcggaaggtgaaata
gtagttactggctctgctgataagacggttcgtgtatggagaggttctgaaggtggagat
tttgattgtaggcacattttgaaggatcatactgctgaggtgcaagctgttacagtccat
gcaaccaataactactttgtcactgcttctcttgatagcacttggtgcttctatgaactt
tcttcaggtttatgtctcactcaggtagaagatacatcaggatctgctgagggatacaca
tctgcagcctttcatcctgacggtctcatccttggaacgggtacctctagagggcttagt
aagatttgggatgtaaaaagtcagtcaaatgttgcaagctttgaggggcatatgggggct
gtaacagccatttcattttcagagaatggctacttcctggcgactgcagcacatgatgga
gttaagctttgggatctgcgtaggctcaagaactttaggactttatccccttatgatgag
aatacgcctacacattcagtggagttcgaccatagtggaagttaccttgctctaggagga
tcagacatcagagtctatcaagttgcgaacgtcaaatctgaatggaattgcataaaaaca
ttccctgacttgtccggcacaggcaaaatattaagtgtcaagtttggccccgatgcaaaa
tacgtggctgttgggtcaatggatagaaaccttagagtatttgggctgcccgaggaaaat
gatgatcagtccgagacatga
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integrated database retrieval system
