Salvia hispanica (chia): 125202553
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Entry
125202553 CDS
T09851
Name
(RefSeq) cleavage stimulating factor 64-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125202553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125202553
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125202553
U7-dependent histone pre-mRNA processing factors
125202553
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
RRM_occluded
RRM_10
HTH_Tnp_Tc5
Motif
Other DBs
NCBI-GeneID:
125202553
NCBI-ProteinID:
XP_047956925
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All DBs
Position
1:16848988..16853057
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AA seq
511 aa
AA seq
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MAANAQSQHRCVFVGNIPYDATEEQITQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKD
EETALSARRNLQGYDINGRQLRVDFAENDKNADKNREQGRGGPGVGPNVDAPKQFGGQAV
LGHPGVHLPVGDSVATAAASVSIPNQIGLQTPSLLGTDPLTRQLAKMSRSQLTEVLSEFK
ALAMQNKEEARKLLLAIPNLSKAIFQVEIMLGVVSPQMLQTTNIRQASSQPVQPLLQNAQ
ILSGLPPLPQNKIQLGLMPSAQDSRVSAGVPNQYNTLQKFITQTQIQHAPLNQNQALQQA
QLIAQFGVSSHPTMHPLSLSGLSVGQQMSVPTSSLNQQMQHPTSQKIGPVLSSNPRYNAV
PRSQTDATDASVLVNPQFSATGIQHSTPTSSGMPEDMDLKGHASNVPSKTNQIDRAPKLV
KLNGGTATPQAVNVPSPMFAPLQSSGVPGRQPPIKEIADTGKQATQVQLPPDLDPSVLQQ
LLNLTPEQLSLLPPDQQEQVMQLQRMLRQAT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaatgcacaatctcagcatcgctgcgtttttgttgggaacataccgtatgat
gctactgaagagcaaatcactcaaatttgcgaggaggttgggccggttgtttcgttcaga
ttagttactgacagagaaaccggaaaaccaaagggttatgggttctgtgagtacaaggat
gaagagacagctctgagtgctcgtcgtaatcttcagggttatgatataaatggccgtcag
ctaagagttgactttgctgagaatgacaagaacgctgacaagaaccgggaacaggggcgt
ggtggtcctggtgttggcccgaatgttgatgctccaaaacaatttgggggtcaagcagtt
cttggacatcccggtgttcatctgccggtaggcgattcagttgctacagctgctgcaagt
gtcagtataccaaatcagataggattacagacaccgtccctgttaggcactgatccttta
actcgacagttggccaaaatgtcaaggagtcagctaacagaggttttgtctgaatttaag
gcactggctatgcaaaataaagaagaagcccggaaactattgctcgccatccccaacttg
tccaaagctatttttcaggttgagattatgcttggggtagtgtcacctcaaatgttgcag
acaaccaatattcggcaagcttcaagccaaccagtacagcctctgttgcaaaatgctcaa
attctttccggcctacccccccttccacaaaacaaaattcaattgggtttgatgccttct
gcacaagatagtcgggtatctgctggtgttccaaaccaatataatacactccagaaattt
attacacaaactcaaattcaacatgcaccattaaaccagaaccaagccttgcagcaagct
caactgattgctcaatttggagtttcctcccatcccactatgcatcctctgtcattgagt
ggtttgtcagttggacaacaaatgtcagttccaacttcttctctcaaccagcaaatgcag
catcctacatcacaaaaaataggcccagtgctgtccagcaatccacggtacaatgctgtg
ccaaggtctcagactgatgccaccgatgcttctgtgctcgtaaatccccaattttcagcg
acaggcattcagcatagcacaccaacatcctctggcatgccggaagatatggatttgaaa
ggacatgcttcaaatgtccctagtaagacgaaccagatcgatagagcaccaaaactggtg
aaactgaatggtggaaccgctactcctcaggctgtgaacgtaccttcacctatgttcgca
ccactccagtcttcgggtgttccaggaagacaacctccaattaaagaaattgcagacact
gggaagcaagctactcaggtgcaacttcccccagacttggatccatctgtgcttcagcaa
ctgctaaatctgacgccagagcagctaagtttgctcccaccggatcagcaagaacaagta
atgcaacttcaacggatgctccggcaggctacatag
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