Salvia hispanica (chia): 125202710
Help
Entry
125202710 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125202710
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125202710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125202710
03019 Messenger RNA biogenesis [BR:
shis03019
]
125202710
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125202710
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125202710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
125202710
NCBI-ProteinID:
XP_047957114
LinkDB
All DBs
Position
1:31664991..31672883
Genome browser
AA seq
970 aa
AA seq
DB search
MEMESTRRSFDRSLSKEPGPKKPRLTEDSAAADRITNGRAGFVQRPAVGGGPRTQRDRDS
ESSDSMRGGFHHQTGAQLHQELVTQYKTALAELTFNSKPIITNLTIIAGESLPAAKAIAA
TICNNIIEVPSDQKLPSLYLLDSIVKNIGRDYIKFFASRLPEVFCKAYRQVDPSIHQGMR
HLFGTWKGVFPPQSLQLIERELGFTSAANVSAASRTESQAQRPAHSIHVNPKYLEARQRL
QTSRSIQQHQRDQVNNPVREKSSGIEFADDYGSGVLGRSGLGSGRMTEHLKDPGYDRPWD
ESDSDLIGMGHQKNGFGLKHGLESYVAHESVNFDSDLQSKKNISSRNTNGMRENWKDSEE
EEYTWSEMNSRHTVADAPTKNQWAPANYDRVDFESHLPGHQNIHDIGPRDEDELSIDSIS
MDRSQVASGAQVPLWSQKLHPPEGSTHLGSGKTLSAQSEGYATGLNSTKSTMGKTHSQSQ
LGQTHIGMPSFKFPMNETPLSKASMSQERQTLAPSSSARSLVHQRPPSPSVASHGQNQFL
NNSSERNPTATGPPKDPRRRPGQKNTNYPDQVSEDPPMPTRGVYQASTQKPQPTNLRSTS
TMAPPTQQRKHAPAARPRSVEVSQFETSAPEHRMLPSQISGSGSRSTMGNSSSDQSNPFT
VDSPGKSITSSLTGSLNNPISSQETSPGSSVKMPSAVNSTSNPFSSLLSSLVAKGLISSS
KSDPVLSTSPKPDLPMDKVPETAKPSSAPVCSVPVTLSKPFMSVSDKPSSSEATLNAPST
EKIKHLIGFDFKPDVVRKFHPDVISDLLCNLPHLCTICGLKLKFQEQLDKHMEWHASKVP
EDDPLSKMSRSWYTDVVDWVSGVGNSHLESSPLDIGGSGDILESNEPLVPADESQCACIL
CGELFEDFYDQENDEWMFKGALYLTIPSLNEGLGATSDTLVLSPIVHSDCISEDTMNDLG
LAYDVKMEKE
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagcacacgaagatcgttcgacagatctctttcgaaagagccgggaccg
aagaaacctaggcttacagaggactctgctgcagcggatcgaatcaccaatggccgtgcc
ggatttgtccaacgtcctgctgttggcggaggcccgaggacccagagggaccgagactcg
gagagtagcgattctatgcgggggggatttcatcaccagacaggggcgcagttacatcag
gaactggtgactcagtacaagaccgcattggctgagctgactttcaattcgaagcccata
ataaccaacctgacaattattgccggagagagtttgcctgctgccaaggccattgcagct
actatctgcaacaatattattgaggttcctagcgatcaaaaactgccttctctgtatcta
ttagacagcattgtgaaaaacattgggagagattacataaaattcttcgcttccagatta
ccggaggtcttttgtaaggcatatagacaggttgatccttcaatacaccaaggtatgcgg
cacctctttgggacctggaagggagtcttccccccacagtcgcttcagctgattgagagg
gaacttggattcacctctgcagctaatgtatcagcagcctctagaactgaatcacaagcc
caacgtcctgcacatagcattcatgtaaaccctaagtatttggaggcaaggcagcgactg
caaaccagcaggtctatccagcaacatcaaagagatcaagtaaataatccagttcgtgag
aaaagttctggtatagaatttgcagatgactatggttctggtgtcttggggcgatcaggc
ttgggaagtggaaggatgacagaacaccttaaagatcctggatatgacaggccctgggat
gaatcagacagtgatttgattgggatgggacatcaaaagaatggttttggtctgaaacat
ggattagaaagctatgttgcccatgaatctgtaaattttgactcagatctacagtctaag
aaaaatatatccagtaggaacacaaatgggatgagggagaactggaaagactctgaggag
gaggagtatacctggagtgagatgaactctagacatactgtagctgatgctccaactaaa
aatcaatgggcaccagccaattatgatagagtggattttgaaagccatctcccaggacat
caaaatatacatgatattgggccaagggatgaagatgaactctcaattgattccatctct
atggatcgcagccaagtggcttcgggggctcaagtgccattgtggtcacaaaagctgcat
ccaccagaagggagtacacatttagggagtggtaaaaccttatcagctcagtctgaggga
tatgcaactgggttgaatagcaccaaaagtacaatgggcaagacccattctcagtcacag
ctcggtcaaactcatattggaatgccaagctttaagttcccaatgaatgaaacacctttg
tcgaaagcatcaatgagtcaagagcggcagacccttgccccttcatcctcagcacgatca
ttagtgcatcaacgtcctccgtcaccttctgttgcttctcacggccagaatcaatttcta
aacaattcttctgagcgcaaccccacagctacaggtcctcctaaagatcctagaaggcgt
ccagggcaaaagaacacgaactatcctgaccaagtttcagaggatcctcctatgccaact
cggggagtttatcaggccagcacacagaagccgcaacctacaaatctacggtctacgtcc
actatggcacctccgactcaacaaaggaaacatgctcctgctgctcgaccaaggagtgtt
gaagtctctcaatttgagacttctgctcctgaacaccgcatgctaccatcacaaatttca
ggctctggaagccgctcgacgatggggaattcgtcttctgaccaatcaaatccttttact
gttgattcccctggaaaatccattactagttcactaacaggaagcttaaataaccctatt
agttctcaagaaaccagtcccggttcatctgtgaagatgccaagtgcagttaattccacc
tcaaatcctttttccagtctcttaagctcattggttgcaaaaggcctgatatcttcttcg
aagtctgatccagtgttgtctacatcacctaaacctgatctacctatggacaaagttccg
gagactgcaaaacctagttcagctccagtttgttctgttccagtcacattgtcaaaacct
tttatgtctgtgagtgacaagccatcttcatctgaggctacgcttaatgccccctcaaca
gagaagataaaacatcttattggttttgacttcaagccagatgtagtccgtaagttccat
ccagatgtgattagtgatcttctctgtaatcttccacatctttgtaccatatgtggtctt
aaactaaaatttcaagaacagcttgacaaacacatggaatggcatgcatcaaaggttcct
gaggatgaccccttgagcaagatgtcaaggagttggtacacagatgtagttgattgggtt
tcaggagttggtaattctcatcttgaaagtagtcctttggatataggaggttcaggtgat
atactagaaagtaatgagccattggtcccagcagatgagagtcaatgtgcatgtatattg
tgtggtgagctgtttgaagatttctacgatcaagaaaacgatgaatggatgtttaaagga
gctctttacttaaccatcccatccctgaatgagggacttggagctacaagtgatactttg
gttcttagtccgatagtccattctgactgtatatcagaagacactatgaatgacttgggg
ctagcttatgatgtcaaaatggaaaaggaataa
DBGET
integrated database retrieval system
