Salvia hispanica (chia): 125203984
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Entry
125203984 CDS
T09851
Name
(RefSeq) polygalacturonase At1g48100 isoform X1
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Module
shis_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125203984
Enzymes [BR:
shis01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
125203984
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Packaging_FI
Motif
Other DBs
NCBI-GeneID:
125203984
NCBI-ProteinID:
XP_047958476
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Position
2:31227957..31230164
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AA seq
460 aa
AA seq
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MKRAKASSLLLFLVLCLVILAAFSTIEARKHHGKKIKMHKNKRSRNGDASLAPAPSPLPN
SGPPVFNILSFGARANGVSDDSKALLKAWKSACKVTGGIVEIPVGLEFLIKPLTLQGPCR
PNLVLQIDGTLLAPSKVWSSPKSSLYQWMNFKWLQNFTIKGAGTVDGQGSNWWASSQPNQ
KKAKRISDVKPTAMRFYKSYDIKVNDISIINSPLCHLKFDDSKRVKVKNVTISAPENSPN
TDGIHLQNSQDVEILHSDIGTGDDCVSIQTGCSNIHVHHINCGPGHGISIGGLGKDKRVA
ACVSNVLVESIAMRGTLYGARIKTWQGGQGSVKNVTFSDIQATDVKVPIMIDQYYCDKNV
CKNQTGAVSISGVRFDGIRGTYAAQPIHLACSSSVPCIDVELVGVELEPSARYGGFQAAM
CWNSYGKTSGRLAPACMDDCVRSGGDVVRRISRSREARCW
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaagagggccaaagcctcctctcttctactctttcttgtgctgtgccttgtcattcta
gctgcattttccacaatcgaggcgcgaaaacaccatggaaagaagatcaaaatgcataag
aataaaaggagcagaaatggagatgcatctcttgcccctgcaccatctccattgccaaac
tccggccctcccgtgttcaacatcttgtcgttcggagctagggctaatggagtctccgat
gactcaaaggcacttctaaaagcttggaaatcggcctgcaaagtgactggaggcattgtt
gagataccggtggggctcgagtttctgatcaagcccctcactctgcaaggaccatgtagg
cctaatcttgttttgcagatagatgggactcttttggccccttcaaaagtctggtcgtcg
ccaaaatccagtttatatcaatggatgaatttcaaatggctgcagaatttcaccataaaa
ggtgcaggcacagttgatggccaaggctcaaactggtgggcttcttctcagcctaatcaa
aagaaagcaaagagaatttcagacgtcaaaccaactgctatgagattctacaaaagctat
gatataaaagtgaacgatataagtatcataaacagccccttgtgccacctcaaattcgat
gactcgaagcgagtgaaggtgaaaaatgtgacaatctctgcacctgaaaacagcccaaac
actgacggaatccatctccaaaactcccaagatgttgaaatccttcactctgatattgga
acaggagatgattgtgtctcaatacaaacaggttgctccaacatccatgtccatcacatc
aattgtggccctggccatggcataagcataggagggctaggaaaggacaagcgcgtcgcg
gcgtgcgtctccaacgtactagtggagagcatcgcgatgcgcgggaccctctacggggcg
aggatcaagacgtggcagggcgggcaagggtccgtcaagaacgtgacattctccgacata
caggccacagacgttaaggttccgatcatgatcgatcaatactactgcgacaaaaacgtg
tgcaagaatcaaacaggggccgtgtcgatctctggggttcgattcgatgggatcaggggg
acttatgcggcgcagccgatccatctggcgtgcagcagctcggtgccgtgcatagacgtc
gagctggtgggcgtggagctcgagccgtcggcgaggtacggcggatttcaggcggcgatg
tgctggaattcgtatgggaagacgtcggggcggctggctccggcgtgcatggacgattgt
gtgaggagtgggggtgatgttgtgaggagaatttctaggtctcgtgaggctaggtgctgg
taa
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