KEGG   Salvia hispanica (chia): 125204040
Entry
125204040         CDS       T09851                                 
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
  KO
K10842  CDK-activating kinase assembly factor MAT1
Organism
shis  Salvia hispanica (chia)
Pathway
shis03022  Basal transcription factors
shis03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125204040
  09124 Replication and repair
   03420 Nucleotide excision repair
    125204040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shis03021]
    125204040
   03400 DNA repair and recombination proteins [BR:shis03400]
    125204040
Transcription machinery [BR:shis03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     125204040
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     125204040
SSDB
Motif
Pfam: MAT1 DUF3867 SUN
Other DBs
NCBI-GeneID: 125204040
NCBI-ProteinID: XP_047958537
LinkDB
Position
2:29191527..29194305
AA seq 188 aa
MVVSSANAFAKEMSIRKRIAGIYNKREEDFSSLREYNDYLEEVEDMIINLVEGINVPAIE
ARISEYQRENAEQIMNAQARKAEEYASALAASKGQVQTTGIDVSSGSQVGTSNVPQGQYA
PAVAGGIAQPRPMGIPNPLGSGHDMMGLEYEDEETRRIRAEKAARAGGWSFEISKKRALE
EAFASIWV
NT seq 567 nt   +upstreamnt  +downstreamnt
atggtggtttcttcagcgaacgcctttgcaaaggaaatgagcataagaaaaaggattgct
ggcatatacaataaacgagaagaggacttctcatccttgcgtgaatacaatgactacttg
gaagaggtagaagatatgataattaatttagtcgaggggataaatgtccccgctatcgaa
gcaagaatttccgagtaccagagagaaaacgctgagcagatcatgaacgctcaagctcgc
aaggccgaggaatatgcatctgctttagcagcaagcaaaggacaagttcaaacaactgga
atcgatgtttcctccggctcccaagtaggcacgagcaacgttccgcaggggcaatacgca
cctgcagttgctggaggaattgcacagcctcggccaatgggcatacctaacccacttggg
tcgggtcatgacatgatgggacttgaatacgaagacgaagaaacaaggagaatccgagca
gagaaggcagccagggcgggtggatggagttttgagataagcaagaaaagggctcttgaa
gaagcttttgctagcatttgggtatga

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