Salvia hispanica (chia): 125204160
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Entry
125204160 CDS
T09851
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125204160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125204160
03036 Chromosome and associated proteins [BR:
shis03036
]
125204160
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125204160
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
125204160
Chromatin remodeling factors
BAF complex
125204160
PBAF complex
125204160
GBAF(ncBAF) complex
125204160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
125204160
NCBI-ProteinID:
XP_047958686
LinkDB
All DBs
Position
2:complement(11140203..11151792)
Genome browser
AA seq
2217 aa
AA seq
DB search
MQSGGGPQQGGGGGHGRSNAASASASPSSSSSAASAFDQQQQQRQQQQQQQRQSMAQQFL
RRPEGNDAILSYQAGTIQGTPGATNFSAASGSTQLPQQPRKFIDLGQQHGSPNITDQSHN
RSQGVEQQMLNPIQQAYLQYTFQSAQQTPTLGMQSQQQVRPAMFGSLGKDQEMRMASMKM
QELVSMQAANQSQGTSSKKPSEQVVQSDKHADNRHRPMPDQRSESKLNPPPLGGQGIQPA
PMQAPQSQQNIMNMPNNQIAMAAQMQAMQALALEHNIDLSHPANANVVAQLIPLMHSRMA
AQQKANENSTGIPSVSFGKQHVTSPSVGNDGSPHGNSSSDVSGQSGSSKVKQAVSPSTLG
VSSNAALPNNCSSTSAQQFSVPHMPPRQHSSLGHGMPPMHPSQSPGNLSQGVDSFLAKTS
VAEASQAQNARQLNRSPQSVTPSNEGDLCNPSTSQGGTSSQMRQLHTGFTKQQLHVLKAQ
ILAFRRLKQKGDVTLPRELLQAITPPPLDLQMQQLLPPPTNAGKDKLAGETVEEHTKHVE
YSEKGAGAAKSVAGVVNMKTEGPGDDRAAAAATATIQNSVVAAKEQRFVGPPGKEEPHHI
GSSGKCEQESEPGNQKTPVRIDVAADRGKGIASQSSASDPVQVKKPIQASNTSQPKDSSS
TRKYHGPLFDFPVFTRKHETLGSSMMNNNSNLILAYDIKDLFADEGGEIHKRKRAEKIGK
IDKILAVNLERKRIRPDLVIRLQIESKKLQLVECQTRLRDEIEQQQQEIMAMPDRPYRKF
VRLCERQRQELNRQSQANQKATREKQLKSIFHWRKKLLEAHWASRDARTARNRGVHKYHE
KMLREFSKMKDDDRNKRMEALKNNDVERYREMLLEQQTNLPGEAAERYAVLSSFLSQTEE
YLHKLGSKITATKNQQEVEEAANAAATAARAHGLSEEEVRAAAACARDEVMIRNRFSEMN
APRDSQSVNKYYNLAHAVNERVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADE
MGLGKTVQVMALIAHLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGGKDQ
RAKLFSQEVLAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRESVLARDLDR
YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPAHEDDWLE
TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCRMSAIQGAIYDWIKSTGTL
RVDPEDEYRKCQKNQNYQAKTYKTLNNRCMELRKTCNHPLLNYPYFSDFSKDFLVRSCGK
LWVLDRVLMKLQRTGHRVLLFSTMTKLLDIMEEYLQWRRLVFRRIDGTTSLEDRESAIVE
FNRPGTDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKV
IYMEAVVGKISSHQKEDEFRSGGVVDSDDDLAGKDRYVGSIESLIRNNIQQYKIDMADEV
INAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMD
EELDWAEDMTRYDQVPDWLRANTQEVNTTIANLSKKPSKNALYGGMQPPVEVASEISERR
RGRPKGKTPIYTELDDENGEFSEASSNDRNEYSVQEEEDGDIGEFEDDESTEAPIVNKDQ
SEEDAPVSADGYEYQRALDNVRNNSILEEAGSSGCSSHSRKLMRMVSPSVSSQKFGSLSA
LDGRSGSQSKKLADDLEEGEIAISGDSPMNQQHSGSWIQDRDEGEDEQVLQPKIKRKRSI
RLRPRSARAEEKPSDKLSLRRGDPTMLPLQVDNKYKTQASDDRARKVLGDSSCIKSEKID
SSIKSKRNLPSRRNTASVQCVLKSGRVNYESALADDASEQHLTINLDTKVAKGPKTSGPK
MSEVILRKCKTVIGKLQRRIDYEGHQIIPQLTELWKRNDYASGDEDSLLDLRKIHNRLDK
YEYSGVMGLVSDVQLMLQSSMQFFGFSYEVRSEAKKVHDLFFDIIAVAFSDTDFREARSS
MSFTAPVSVPATCPSSRQIPASQGKRQKLVKEVDSENAPFLKPQTRLPIHAGESSKFRNS
MPHKESRLGNSSSRDLGQPDDTYPFTHPGDLVICKKKRKDREKSAAKSGNGSAGPLSPTG
IGRGMKSPGSISGARDIGLSQHGWGPLSPQQGNSSVGWANPVKKMRTDAGRRRPSHL
NT seq
6654 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccggtggtggcccccaacagggtggaggcggtggccatggccggagtaatgcc
gcctcagcctctgcttctccgtcctcatcgtcatccgcagcgtccgcatttgatcagcag
caacagcagagacagcaacagcagcagcagcagagacagtcgatggctcaacagtttctg
aggagacctgaagggaatgatgccattctgtcgtaccaagctggcacaatacaaggaacc
ccaggggcgaccaatttttctgcagcatctggctccacacagctgcctcaacagcctagg
aagttcattgatttgggccagcagcatggttcccccaatattacggaccaaagtcataat
agaagtcaaggtgttgagcaacagatgttgaatccgatacaacaagcttatttgcagtat
acatttcagtcagcccaacagacacctaccttaggaatgcaatcgcagcagcaggtgaga
ccagccatgtttggttctcttggaaaagatcaagaaatgaggatggcaagcatgaaaatg
caagagctggtgtccatgcaagcagcaaatcagtctcagggtacctcctccaagaaaccc
tccgagcaggttgttcagagtgataaacatgcagataacagacaccgccctatgcccgat
cagagaagtgaatccaaactgaaccctcctccattaggcggtcagggaatccaacctgca
cctatgcaagctccacaatctcagcaaaatatcatgaacatgccaaacaatcagatagct
atggctgcacagatgcaggcaatgcaggcattggctcttgagcataatattgatctgtca
catcctgcaaacgcaaatgtggttgcgcagcttattccattaatgcactccaggatggct
gctcagcaaaaagctaatgaaaatagtactggtatcccttctgtatcctttggtaaacag
catgttacctctccgtcagttggaaatgacggttctccccatggtaattcctcaagtgac
gtgtcaggacaatctgggtcttctaaagttaagcaggcagtttcacctagtactcttggt
gtgagttccaatgcagctctacctaacaattgcagcagcacttctgcccaacagttctct
gtgccacatatgccccctaggcagcattcctctcttggtcatggaatgcctcctatgcat
ccttcgcagtcaccagggaatctgagccaaggggttgacagttttcttgcaaaaacttct
gttgcagaagcttctcaggcacaaaatgccagacaacttaatcggtctcctcaatccgta
actccatctaatgaaggggatttgtgtaatccatcaacatctcaggggggaaccagttca
cagatgagacaattacacactggttttaccaagcagcagttgcatgtacttaaagcacag
attcttgcatttaggcgtctgaagcaaaaaggcgatgtaactttgccacgtgaactgctc
caagctattactcctccaccacttgatttacagatgcaacagctgcttccacctcccaca
aatgctggcaaggacaaattagccggagaaactgtagaggagcacaccaaacatgtggag
tacagtgagaaaggggctggggctgcaaaatcagtagctggagtagttaatatgaaaaca
gaaggtccaggagatgatagggctgctgctgccgcaactgcgaccattcagaactctgtt
gttgcagcaaaggagcagaggtttgtgggtcctcctggaaaagaagagccgcatcatatt
ggtagttctgggaaatgcgaacaagagtctgaaccgggcaatcagaaaacacctgtcagg
attgatgttgctgcagacaggggtaaaggaattgcctcacagtcaagtgcttcagatcca
gtgcaggttaagaaacccattcaagcaagtaatacatcccaacctaaggattctagttca
acacgaaaatatcatgggccgttatttgatttccctgttttcaccagaaaacatgagacc
cttggatcctctatgatgaacaacaatagtaacttgattttagcgtatgatattaaagat
ctttttgctgatgaaggtggagagatccacaaaaggaaaagggctgaaaaaattgggaaa
attgataaaatacttgctgtgaacttagagaggaagagaattagaccagatcttgttatt
cggcttcaaattgaatcaaagaaacttcagcttgttgagtgccagacacgcttgagggat
gagattgagcaacagcaacaagaaataatggctatgcctgatagaccatacaggaaattc
gttcgactgtgtgaacgtcagcgccaggagcttaaccggcaatcacaggctaatcagaag
gcaactagggagaagcaactaaaatccatattccattggcgcaaaaagcttcttgaggca
cattgggcttctcgtgatgctcgaaccgcccgcaatagaggagtgcataaatatcatgaa
aagatgttgagagagttctccaaaatgaaggatgatgatcgcaataaaagaatggaagcc
ttgaaaaataatgatgtggaaagatatagagagatgcttctggaacaacaaactaactta
cctggggaggctgcagaaagatatgctgttctctcatcatttttaagtcaaactgaggag
tatcttcacaaattgggcagtaaaataacagccactaaaaatcagcaggaggttgaggag
gcagctaatgccgctgccaccgctgcacgtgcccatggtctctcggaagaagaagtaaga
gccgctgctgcctgtgcgagagatgaagtcatgataaggaaccggttttctgagatgaat
gcaccaagagatagtcagtctgttaacaagtactacaacctggcacatgctgtgaatgaa
agggtcataaggcagccttcaatgctacgagctggaaccctacgagactatcaacttgtt
ggtttgcagtggatgctatcattatacaataacaaattaaatggcattttagcagatgag
atgggtctgggcaaaactgtgcaggtgatggccttgattgctcatttaatggaattcaaa
ggaaattatggccctcatcttattattgttcccaatgctgtgcttgtcaactggaagagt
gaattgcataattggcttccgagtgtttcctgtatatattatgttggtgggaaagaccaa
agggcgaaattattttctcaagaagtgctagccatgaagtttaatgtgcttgtaactacc
tatgagttcatcatgtatgatcgttcaaaactttcaaaaattgattggaaatatattata
attgatgaagcacaacggatgaaggacagagagtcagtattagctcgtgatcttgatagg
tatcgctgccaaaggcgtttgcttcttacagggacaccattgcagaatgatcttaaagag
ctttggtctcttttaaacctactgctcccagaagtttttgataatagaaaagcatttcat
gattggttctctcaaccatttcaaaaagaagggcctgcacatgaagatgactggctcgag
acagagaagaaggtgataattatccatagactacatcaaatattagaaccttttatgctt
cggcggcgtgttgaagatgtagaaggatcacttcctccaaaggtctcgattgttttgaaa
tgtcgaatgtctgcaatacagggtgccatttatgattggattaaatcaactggtactctt
agggttgaccctgaagatgaatatcgcaagtgtcagaagaatcaaaattatcaggctaaa
acttacaaaactttaaacaatagatgcatggagctaagaaaaacttgcaaccatccattg
ctaaactacccatatttcagtgacttctcaaaggattttcttgtgaggtcttgtggaaaa
ttgtgggttcttgatagagttttgatgaagcttcagagaacgggacatagggtactgctc
tttagtaccatgaccaaacttcttgatataatggaagaatatttgcagtggcgaaggctt
gttttcagaagaattgatgggacgactagcttggaagaccgcgaaagtgctattgtggag
tttaatcggccaggcactgattgttttatcttcttacttagcattcgtgctgctggacgg
ggtctcaatcttcagtctgctgacacagtgattatatatgatccggatccaaacccaaaa
aatgaggaacaggctgttgctcgtgctcaccgtattgggcagacgagggaggtgaaagtc
atttacatggaagctgtggtcggcaaaatatccagtcatcagaaagaggacgagttcagg
agtggtggagtagttgattcagatgatgaccttgctggcaaggaccggtatgtgggttca
attgagagcttgattcggaataatattcaacagtataagattgacatggctgatgaagtt
ataaatgctgggcggtttgaccagaggactacacatgaagagagacgactaactttagaa
acactgttgcatgatgaagaaagataccaagaaacagttcacgacgttccttctcttcac
gaggtaaaccgtatgattgctcggagtgaggaagaagtagagctctttgatcaaatggat
gaagaacttgactgggcagaggacatgactcgatatgatcaggtccctgattggcttcgt
gctaatacacaagaagtaaataccacaattgctaatttatcaaagaagccatcaaagaat
gctttatatggtgggatgcaacctcctgttgaagtggcttctgagatttctgagaggagg
agagggcggcctaagggaaagactcctatttatactgaattagatgatgaaaatggagaa
ttttctgaagcaagctccaatgatagaaatgaatactctgttcaagaagaagaagatgga
gacattggggagtttgaagatgatgaatccactgaagcgcctatagttaataaggatcaa
tcagaagaagatgctcctgtttctgctgatggatatgaataccaaagagctttggataat
gtcagaaacaatagcatacttgaagaagcaggctcttctgggtgctcttcgcacagtagg
aagttaatgcgcatggtctcaccttccgtgtcttctcaaaagtttggatcactttctgca
ttagatggcaggtccggctcccaatcaaagaaattggcagatgacttagaagaaggagag
attgccatatctggagattctcctatgaaccagcagcactcaggtagctggatccaagat
cgtgatgaaggtgaagatgaacaggtcttgcagcccaagataaaacgaaaacggagtatt
cggcttcgcccgcggtctgctagggcagaagagaagcctagtgacaagttatctcttcgt
cgtggtgatcctactatgttaccactacaggtagataataaatacaagactcaagcaagt
gatgaccgtgcccgtaaagttcttggagattctagttgtattaaatcagagaaaattgat
tcatctatcaagagcaaaagaaatctaccatcaaggagaaatacagctagtgtgcaatgt
gttcttaaatctgggagagtgaactatgagtctgctcttgcagatgatgcctctgaacaa
cacctcacaataaacttggacactaaagttgcgaaggggcctaaaactagtggccctaag
atgtcggaggtcatcctgagaaagtgcaagactgttataggcaagcttcagagaagaata
gattatgaaggtcatcaaataataccacagctaactgaactgtggaaaagaaatgattac
gccagtggggatgaagatagccttttggatttgagaaagattcataaccgtcttgacaaa
tatgagtatagtggagtcatggggcttgtttctgacgtgcagcttatgttgcagtctagc
atgcagttttttggtttttcatatgaggtgaggtcggaggcaaagaaagtccatgatcta
ttctttgatatcattgcagtagcattctcagatactgattttcgagaagccagaagttcc
atgtctttcactgctcctgtttctgtgccagccacctgtccatcttcacggcagatacct
gcttctcagggcaagcgccagaaattagtaaaagaggtggattcagaaaatgctcctttc
ctgaagccacagacccgcttgcccattcacgctggtgagagttctaaattcaggaactct
atgcctcacaaggaatcgaggcttggaaacagcagcagtcgggatcttggccaaccggat
gatacttatcctttcactcaccctggggacctcgttatctgcaaaaagaagagaaaagac
agggagaagtcggctgcaaagtctggaaatggatcagcaggtccattgtcgcctacaggt
attgggcgtgggatgaagagcccagggtcgatctcaggcgccagagatatcgggttgagc
caacatggctggggtcccctttcccctcaacaagggaacagcagtgttggctgggcgaat
cctgtaaagaaaatgagaactgatgctggaaggcggcggccgagccatttatga
DBGET
integrated database retrieval system
