Salvia hispanica (chia): 125204350
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Entry
125204350 CDS
T09851
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04120
Ubiquitin mediated proteolysis
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125204350
04120 Ubiquitin mediated proteolysis
125204350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125204350
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125204350
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125204350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-ANAPC11
zf-RING_5
GTP-bdg_M
zf_RING_Vps8
FlxA
zf-RING_Vps41
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
125204350
NCBI-ProteinID:
XP_047958937
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All DBs
Position
2:19516600..19520318
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AA seq
528 aa
AA seq
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MMKLQTYAGFSVVAALAIIYHAFDSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQL
TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKSLHWLA
QKRVEYIETTPMVPKLSHVRIVSFMVFLLLIDGIFLYDSVDHLLETRQASVALFFSFEYI
ILATTTLSTFVKYVFHVSDMLMEGQWEKKAVCTFYLELIRDLLHLTLCMCFFLIIFLNYG
VPLHLIRELYETFRNFRIRVADYIRYRRVTSNMNDRFPDASPEELSVNDATCIICREEMT
AAKKLVCGHLFHVNCLRSWLERQNTCPTCRALVIPPEHGTSTSSTMINSLQQGTGTAGTS
TQGSSGDGVANDNVSQHQIRLQAAAAAASLYEKSFVYPSPNALMQSPGLASPAQVFQHSI
MARDGREGAASEVTEQFSETTLNQFPHYAMAPNQFPHFNSGFGDGSSSESQLDLQRKLIE
HQIEFLQNQLQLLRTSNREKMKDGGTSFDIKGKSVSSPSSPVIDSGET
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacttatgctgggttcagtgtggtagctgcattggctattatttac
catgcctttgatagcagaggccaattttatcctgcaatggtttacttgtcgacctcaaag
atcagtctagtgcttcttctgaatatgggattggtttttatgtgcatcctgtggcaattg
accaagaaactcttccttggttcactccgtgaagcagaggtcgagaggctgaatgagcag
tcatggcgggaggtcatggaaatattgtttgcaataactatttttagacaagatttttca
gttacatttcttgcaatggttacagccttgcttctgattaaatcattgcattggttggcc
caaaagagggtggaatacatagaaacaactccaatggttccaaagctatctcatgtgcgc
attgtatctttcatggtgttcctactccttattgatggcatctttctgtatgactcagtt
gatcatttattagaaaccagacaagcttcagttgcactgttcttttcatttgaatacatt
atactggctacaacaaccctctcaaccttcgtgaagtatgtgttccatgtcagtgacatg
cttatggaaggacaatgggaaaagaaggctgtctgcacattttacttggagcttatccga
gacttgctgcacttgactctatgcatgtgtttcttcctcatcatctttttgaactatggt
gtgcctcttcacttgatccgcgagctgtacgagacattccgcaactttagaatccgtgtg
gctgattatatacgttaccggagggtcacttcgaatatgaatgatcgtttcccagacgca
agccctgaagaactcagtgtaaatgacgcaacctgcattatatgtcgagaggagatgact
gcagccaaaaaacttgtatgtggacatcttttccatgtgaactgcctcagatcatggttg
gaaagacaaaacacatgccctacatgcagggctcttgttataccacctgagcacgggaca
tctacgagttcaacaatgataaatagcctgcagcaaggaactggtacggctggtacttct
acacaaggatctagtggtgatggtgtggcaaatgataatgtcagtcaacatcagattaga
ctccaagcagcagcagctgccgcctccttatatgaaaaatcttttgtttatccttctcca
aatgctctaatgcaatcacctggattggcctcacctgcgcaagtatttcaacattcgata
atggcaagagatggtagggagggtgctgctagtgaagtgactgaacagttttccgaaaca
accttaaatcagttcccacattatgctatggctccgaatcagttcccacatttcaactcg
ggatttggagatgggagttcatcagagtctcaacttgatttgcaaaggaagctaatcgag
caccagattgagtttctgcaaaaccagctccagctgctaagaacttcaaatagggagaaa
atgaaggatggggggacttcatttgatatcaaagggaaatcggtatcatcaccatcttcg
cctgtgattgactctggtgagacctaa
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