Salvia hispanica (chia): 125204519
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Entry
125204519 CDS
T09851
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
shis
Salvia hispanica (chia)
Pathway
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125204519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125204519
03400 DNA repair and recombination proteins [BR:
shis03400
]
125204519
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125204519
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
125204519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
AAA_30
Motif
Other DBs
NCBI-GeneID:
125204519
NCBI-ProteinID:
XP_047959154
LinkDB
All DBs
Position
2:13139140..13145953
Genome browser
AA seq
1218 aa
AA seq
DB search
MEEEEEDRILLSTLGVTSANPVDIERDLIEKAREDAGDSHKVAADIEEHDTVKSNGTSSH
GHGNLVNKLRAVNLELDAVRSAVEQLEDFKRDKDQLSDEDDKTEQDNAEGDTIVRQSSSS
VTLQHALATDRLDSLLKTRAQLEKEISESFKSNQDDDRLIRNLVKEVPKSKRGLKEVDNI
SRNKNKRLKKVSVDDDDDDFEAILNATSAGFVETERDELIRKGILTPFHKLKGYERPIHE
PGSSSMHVASEDPMEYNDLASSSIARAVQSISKASKARPATKMLDPEEVPKLDAPSFPFQ
RLQTPLKIPQSLKTESDKVKEITRTKRRPQPGKKWKRLISREEKLEEEGDLKTSSNRDDN
LEGVEDVDDEESSFVTLEGGLKIPETIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGL
GKTIQILAFLGSLHFSGLYKPSIIICPVTLLRQWKREAKKWYPDFHVELLHDSAQETPCR
KKQPRSSDSDSDSDDLSDGDYEEKSSSKSTNKWDSLINRVMRSESGLLITTYEQLRLQGD
KLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRVIMTGAPIQNKLSELWSLFDFVF
PGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLILPYLLRRMKADVDAH
LTKKTEHVLFCSLTHEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLERE
HSHGNPDYGNFKRSGKMKVVAEVLNAWKDQGHRVLLFAQTTQMLDIMENFLVASGYIYRR
MDGMTPVKQRMALIDEFNNTDDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQA
RERAWRIGQKKDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQRRFFKARDMKDL
FILNDDGDGGSTETSSIFSQISHKVNIVGASKDKQDESTPVKPSTSKTDALTIDLENEVG
KNIGQDKASCSDAKADEETNFLQTLFDTHGIHSAVNHDAIMNVNDEEKMKLEEEASKVAQ
RASEALRQSRMLRNRENITVPTWTGKSGAAGAPSSVRRKFGSTVNSHLVTLRQSEVVSNN
GASKLNRFAAGASSGEALSSGELLARLKRNQEQAVSDGLEHQLAIGTPSNGRERSAANSH
SRSASNTVVLPELLIRQICSFIQRQGGSSTSATIVDHFKDRIPSKDLPLFKSLLKEIASL
EKNPSGSYWVLKPEYHDQ
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaggaagaagacaggattttactgagcactttaggcgtcacgtcggccaat
cctgtagatattgagcgtgacctcatagagaaggcgagagaagatgcaggagactctcat
aaagttgctgcagacattgaggaacatgacactgtaaagagcaatgggacctcatctcat
ggccatggtaacttggttaacaaattgagggcagttaaccttgaattagatgctgttaga
tctgctgtagaacagttagaggacttcaagagagacaaggatcaactttcggatgaggat
gacaagacagagcaggataatgcagaaggggatacaattgttcgtcagtcatcatcaagt
gtgacccttcagcatgctcttgccacagatcgattagacagcctgctaaaaacgagggct
cagcttgagaaagagatctccgaatcttttaagagtaaccaagatgatgacaggttgata
agaaaccttgtaaaagaagtgcccaaatctaagcgaggattgaaagaggttgataatata
agccgtaataagaacaagcggcttaaaaaagtttcagtagatgatgacgatgatgatttt
gaagccattctgaatgcaacatctgcggggtttgtggagactgaaagggatgagctaatt
cggaaaggaattttaactccttttcacaagcttaaaggatatgaacgtcctatccatgag
cctggatcatccagtatgcacgtagcatctgaggatccaatggaatataatgatcttgct
tcctccagcatagccagggctgtccagtcaatttcgaaggcctcaaaagcacgcccggca
accaaaatgcttgatcctgaagaagtacctaaacttgatgcacccagcttcccatttcaa
agacttcagactcctttgaagatccctcagtccctcaaaacagaatcagacaaggtcaaa
gaaattacaagaacgaaaagaaggcctcaacctgggaagaagtggaaaaggttgatttcc
cgtgaggaaaagctcgaggaagaaggtgatttgaagacttccagtaacagagatgataac
cttgaaggtgtagaagatgtggatgatgaggaatcttcatttgttacgcttgagggggga
ttaaaaatcccagaaacaatttttagcaaactttttgactatcagaaggttggtgtccaa
tggttatgggaacttcattgtcaaagagcaggtggaataattggggatgagatgggcctt
ggtaaaacaatacagatcttggcctttctcggatcattgcatttcagtggattgtacaaa
cccagcattattatttgtccagtcacactcctacggcagtggaagcgagaagctaagaaa
tggtacccagacttccatgtggagttattacatgattctgcacaggaaacaccctgtaga
aaaaagcaaccaagatcaagtgacagtgatagtgattctgatgatttgagtgatggtgat
tatgaagaaaaatcatcgtcaaaaagcactaacaagtgggattctttgataaatcgtgtc
atgagatcagagtctggactactgataaccacgtatgagcaacttcgcctgcaaggggat
aaattgcttgatattgaatggggatatgcagttttagatgaaggacatcgaattcggaat
ccaaatgctgaggttactcttgtttgcaaacagttgcagactgttcatcgcgtaataatg
actggtgctcctattcagaacaagctatctgagttgtggtctttatttgattttgtgttc
cctgggaagttgggtgtcttgccagtgtttgaggcagagtttgcggttcccatatctgtt
ggtggttatgccaatgcaactccattacaagtatccactgcctacagatgtgctgttgtc
ctacgtgacttaatcttgccttatctcctacgccgaatgaaggcagatgtagatgctcac
cttacaaagaagactgaacatgtcctcttctgcagtcttactcatgagcagagatctgtg
tatcgtgcttttcttgctagctcggaagttgaacaaatttttgatggaagcagaaactct
ttatatggaattgatgttatgcgtaaaatttgtaaccatcccgaccttcttgagagagaa
cattctcatggaaatccagattatgggaatttcaaacgcagtggaaaaatgaaggttgtt
gctgaagtacttaatgcatggaaagatcagggacaccgcgttcttctttttgcacaaaca
actcagatgcttgacatcatggagaattttcttgttgccagtggctatatttataggaga
atggatggtatgactcctgtgaaacagagaatggccctgatagacgagtttaacaataca
gatgatgtattcattttcattttaacaaccaaggttggtggtctgggaacaaatttgact
ggtgctaacagagtgataatctttgaccccgactggaatccctcaacagatatgcaggct
agagaacgtgcttggcgtattggccaaaaaaaagatgtaacagtctatagattgattact
cgtggaaccattgaagagaaggtttatcagaggcagatatataagcatttcctgacaaat
aagatattgaagaatccgcagcagagaagattttttaaagcccgtgacatgaaggatctt
ttcatattgaatgatgatggcgatggtggctctactgaaacatctagcatttttagccag
atatctcacaaagtaaatattgttggagctagcaaagataagcaggatgagtcgactccc
gtgaaacctagcacatccaaaacagatgctttaacaattgatttagaaaacgaggtaggt
aaaaacattggtcaagacaaagccagttgcagtgatgcgaaagcagatgaagagacaaac
tttttgcagactctctttgatacccacgggattcatagcgctgtaaaccatgatgcaatt
atgaatgtaaatgatgaagagaagatgaagcttgaggaggaggcctcaaaggtagcccaa
agagcctcggaagcattgcgacaatcacgaatgctccggaaccgagaaaatataaccgtt
ccaacatggactggaaaatcaggagctgctggtgcaccatcatcagtgaggaggaaattt
ggctccacagttaattcccacttggtaactttgaggcaatcagaagtagtttcaaataat
ggtgccagcaagttaaatagatttgctgctggtgcgtcttctggtgaagccttatcttcc
ggagagttgttagctaggttaaaaagaaaccaagaacaagctgtcagtgatggtcttgaa
catcagctagctattggtacaccttccaatggaagagaacggtccgcagctaacagtcat
tctagatcagcaagcaacactgtagtacttccagaacttctgattcgtcaaatctgttct
ttcattcagcgacaaggtgggagctcaacttcagccacaatagtggatcacttcaaagac
aggataccttcaaaagatttgcctttgttcaagagtcttctcaaggagatagcttcattg
gagaaaaaccctagtggatcatattgggttctgaagccagaatatcacgatcaatga
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