Salvia hispanica (chia): 125204779
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Entry
125204779 CDS
T09851
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
shis
Salvia hispanica (chia)
Pathway
shis04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125204779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125204779
Membrane trafficking [BR:
shis04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125204779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
TPR_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
125204779
NCBI-ProteinID:
XP_047959464
LinkDB
All DBs
Position
2:32984077..32992900
Genome browser
AA seq
1012 aa
AA seq
DB search
MVHSAYDSFQLLHNSTAKIDAVESYGHNLLLSCSDGSLRIYCPESSANDPRSPPPSSDFY
LQYPELKKEPYVLERTINGFSRRPMLAMEVLKSRELLLSLSESIAFHRLPNFETLAVITK
AKGANAYSWDERRGFLCFARQRRVCIFRHDGGRGFVEVKDFGVPDSVKSMSWCGENICLG
IRKEYVILNSTNGVLSEVFPSGRIASPLVVSLPTGELLLGKDNIGVFVDQNGKLLQEGRI
CWSEAPAAVVVEKPYAVGLLPRHIEIRSLRDPYPLIQTVVLRNVRRILQSAHVIVVALES
SVYGFFPVPIGAQIVQLTASGNFEEALALCKLLPPEDSNLRAAKEQSIHIRYAHYLFENG
DYEEAMEHFYASQVEINYVLSLYPSIVLPKSSVIPDPEQYMDVGGDAPVLSRGSSSLSDD
MESSLPLHALDSEERTDLESRKMSHNTLMALIKFLQRKRFIIVEKAAAEGTEEAVSDAVG
HNFVSYGSGRPRKTVKARANVSISSVARDTAAILDTALLQALLLTGQTSAALELLRGLNY
CDLRICEEVLQERNQHACLLELYKCNAMHHEALKLLHKLVEDSNSDNPPAELGQKFKPEM
IIDYLKPLCGTDPMLVLEFSMLVLESCPSQTIELFLSGNIQADLVNSYLKQHAPNMQTTY
LELMLAMNESSVSGNLQNEMMQIYLSEVLDWYKDLNSQQKWDEKAFSPTRKKLLSALEGI
SGYNPEVLLKRLPPDALYEERAILLGKMNQHELALSIYVHKLNVPELALSYCDRIYESGP
QHSGKSHGNIYLILLQIYLNPQRTTKNFEKRITSLTSNRSSAFHRVVHAAVKNKGRLSKK
IAQIEGAAETRISQSGTDSGKSDYDTDDANDNEEGTSTIMLDKVLHLLGQRWDRINGAQA
LRLLPRETKLKNLLPFLGPLLRKSSEVYRNFSVIKSLRESENLQVKEDLYSLRKNSVKIS
GDSMCSLCNKKIGTSVFAVYPNGKTLVHFVCFKDSQSMKTGGKGSRSPFQVR
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatagtgcgtatgattcctttcagctcctccacaactccaccgccaaaatcgac
gccgtagaatcctacggccacaacctccttctatcctgctccgacggttccctccgcatt
tactgcccggagtcctccgccaacgacccccgatctccgccgccgtcctccgatttctat
ctgcagtatcccgagctgaagaaggagccttacgtcctcgagcggacgatcaatggattc
tctaggaggcctatgctcgccatggaggtcctcaagtcgcgggagctcctcctctcgctc
tcggaatcgatcgcctttcaccgcctccccaatttcgagaccctcgccgtgatcaccaag
gccaagggcgccaacgcctactcctgggatgagaggcgcggatttctctgctttgcgcgc
cagaggagggtttgcatcttcagacacgatgggggacggggtttcgtagaggtaaaagat
tttggtgttcccgattcagtcaaatcaatgtcatggtgtggtgagaatatatgtttgggg
attcgaaaggagtatgtgatattaaattccacaaatggtgtgttgtctgaggtgttcccc
tctggaaggattgcttcacctttggtcgtatctcttccaactggggagcttcttcttggg
aaggataatattggagtgtttgtcgaccaaaatggaaaacttcttcaggaaggcaggatt
tgctggtcagaggctcctgcagcagttgttgtcgaaaagccatatgcagtaggtcttcta
ccaagacatattgagatacggtcccttcgtgatccttatccactgatccagaccgttgtt
ctccggaatgttcgtcggatcctccagagtgcccatgttatagttgttgcattagagagt
tccgtttatggcttctttcctgttcctatcggggcacagattgtacaactaacagcttca
ggcaactttgaggaagcactggctttgtgcaagctacttcctcctgaagattcaaacctc
cgagccgcaaaggagcagtcaattcatattagatatgctcactatttatttgagaatggg
gactatgaggaggcaatggaacatttttatgcatctcaagtggaaatcaattatgtgctt
tctttgtatccatcaatcgttcttcccaaatcatctgttatacctgaccctgagcaatat
atggatgttggtggagatgctccagttctatcaagaggttcctcaagcttgtcagatgac
atggaatcttcacttccacttcatgccctagattctgaggaaagaacagatcttgaatcc
aggaaaatgagccacaatactctgatggctctcattaagttcttgcagaggaaaagattt
attattgttgaaaaagctgctgcagaaggaactgaggaggctgtttcagatgccgtagga
cataatttcgtttcttatggtagtggtcggccaaggaaaacggtaaaggctcgagccaat
gtatctatcagctcagttgctagggacactgcagccatacttgacacagcattactccag
gcccttctattgacaggacaaacttcagctgctttggaactacttaggggtctcaattat
tgtgacttaaggatatgtgaggaggttttgcaggaaaggaatcagcatgcctgtctgcta
gaactgtataaatgtaatgccatgcatcatgaagcactaaagcttctgcacaaattggtg
gaagactcaaactcagacaacccaccagctgaacttggacagaagtttaagcctgaaatg
attattgattatcttaaacctctctgtggtacagatccgatgcttgtcctggaattttct
atgctcgtccttgaaagctgcccctcacaaactattgagctgttcttgtctggaaatatt
caagcagacttagtgaactcttatctgaaacagcatgctccaaatatgcagactacatat
ttagaacttatgcttgcaatgaatgagagcagtgtctccgggaacctccagaatgaaatg
atgcaaatatacctgtcagaagtgcttgattggtacaaagatcttaattctcaacaaaag
tgggacgagaaagctttttctcctacaaggaagaagctgttgtctgctttggagggtatc
tctgggtacaaccctgaggttttgttgaagcgtcttccgccagatgccttgtatgaagag
cgggcaattttgttgggaaagatgaaccaacatgagcttgctctttcgatttatgttcac
aagcttaatgttcctgaattggcgctgtcctactgtgatcggatatatgaatcgggacct
caacactcagggaaatctcatggaaacatttaccttattctactacaaatatatctgaat
cctcagaggactacgaaaaactttgaaaagagaattactagcttgacatccaaccgaagt
tctgcattccacagggttgttcatgcggctgttaaaaataaaggtcgcctgtcaaaaaag
attgcgcaaattgaaggtgctgcggagacacgcatcagccaaagtggtactgacagtgga
aaaagtgattatgatactgacgatgccaatgataatgaggaaggaacttctaccattatg
ctcgataaggttcttcatttgttgggccaacgatgggatcgaataaatggagctcaggct
ctaagactgcttcctagggaaactaagctgaagaatctacttcctttccttggaccactt
ttaagaaaatccagcgaagtatacaggaatttttcagtcataaagagcctcagagagagt
gagaacctacaggtcaaagaagatctctatagcctaaggaagaattcagtgaagattagt
ggcgacagtatgtgttcgctttgcaacaaaaaaataggaaccagtgtgtttgcagtttat
cctaatggaaagacgcttgtccatttcgtatgcttcaaagattcacagagtatgaagact
gggggaaaaggctcacgctcaccgttccaagttagatga
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