Salvia hispanica (chia): 125205289
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Entry
125205289 CDS
T09851
Name
(RefSeq) protein DAMAGED DNA-BINDING 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03420
Nucleotide excision repair
shis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125205289
09124 Replication and repair
03420 Nucleotide excision repair
125205289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125205289
03400 DNA repair and recombination proteins [BR:
shis03400
]
125205289
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125205289
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125205289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WD_LRWD1
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Upf2
Motif
Other DBs
NCBI-GeneID:
125205289
NCBI-ProteinID:
XP_047960494
LinkDB
All DBs
Position
1:34534748..34539946
Genome browser
AA seq
553 aa
AA seq
DB search
MAPQTRRAPSFPKIVIERDSDTEDSSEDEEEDFDDEVQKLVGEASDEEQAEEKDEASTSA
KRKREPITISLKRVCKVCKQSGHEAGFRGATYIDCPMKPCFLCKLPGHTTMTCPHKVATE
FGVSPAPLKKSHNSLKYLFDRQLRCHVPKMKPAFVIPNKVNCAVIRYHSRRVTCLEFHPT
KNNILISGDKKGQLGVWDYEKVHERIVYGNIHSCILNNMKYNPLNDGTVYGASSDGTVSS
TDLETGISSSLVNLNPAGWQGPSSWKMLYGLDLNSEKGILLAADNFGLLYMIDARSNNVT
GKPILIHKKKSKVTGLHCHPLQPDLLLSCGNDHFARIWDIRRLEDGSSIYNLQHKRVVNS
AYFSPQSGSKILTTSQDNRIRVWDSIFGDLDSPSREIVHSQDFNRHLTPFRAEWDPKDIS
ESLIVVGRYISENYNGVALHPIDFIDITNGQLVAEVMDPNIMTITPVNKLHPRDDVLASG
SSRSIFIWKPQENTELEREEVANRIIICGKAEKSRKGKLDDDSGDDDMFDSKKNSKTKKI
HVKSKVHGGKRKC
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcagacgaggagggctccctccttccccaaaatcgtgattgagagagactcc
gacaccgaagatagttcagaagacgaagaagaagattttgatgatgaagtccagaaactc
gtcggagaggcgtcggatgaagagcaagcagaggaaaaggatgaggcgtcgacgtcggcg
aagaggaaaagggagcctatcactatcagcctcaagagagtttgcaaagtgtgtaagcag
tcaggtcacgaagcagggtttcgtggcgccacctacattgactgccctatgaagccatgt
tttctttgcaaactgcctgggcataccacgatgacttgcccgcacaaagtggctactgag
tttggggtttcgcctgcacccttgaagaaatctcataattcgttgaagtatcttttcgac
cgtcaacttaggtgtcatgtgcctaagatgaagccggcatttgtgattccgaataaagtt
aactgtgcagtaattagatatcatagcagacgtgttacatgtttggagttccacccaaca
aagaataacattcttatatctggggataagaaaggacagcttggagtttgggattatgag
aaagtgcacgagaggatagtatatggaaacatacatagctgcatattgaacaacatgaag
tataatccattaaatgatggaaccgtctatggtgcctcttcagatggaactgtcagcagc
actgatttagaaactggaatttcatcatcattggtcaacctcaatcctgctgggtggcag
gggcctagcagttggaagatgctctatggtctggatctgaactctgagaaaggaattttg
cttgctgcagataattttgggcttctctatatgattgatgcgcgctccaacaatgtgaca
ggaaaacctatactgattcacaagaaaaaaagcaaagttactggtttacactgtcatcct
ctccaaccagatctccttctaagttgtggcaacgatcacttcgctcgtatatgggacatt
agacgacttgaagatggctcttctatttataatcttcaacacaagcgtgttgttaattca
gcctatttttctccacaaagtggtagcaaaatactaaccacatctcaggacaaccggatt
cgtgtatgggattccatctttggagatttggactctccaagccgagagattgtgcacagc
caggatttcaatcggcatttgactccttttcgagctgaatgggatccaaaggatatctca
gagtccctcattgttgttgggcgttacataagtgaaaactacaatggagtagccttacat
cccatagattttattgacatcacaaatggtcagttagtcgcggaggtcatggatccaaat
ataatgacaatcactcctgtaaataagctacatccacgtgatgatgtcctggcatctggt
agttccaggtctatcttcatctggaagccccaagaaaacactgagctagagcgcgaagag
gtagctaatcggatcattatctgcgggaaggctgaaaaatcgcggaaagggaagctcgat
gatgacagtggtgatgatgacatgtttgactccaagaagaactcgaagacaaagaaaatt
catgtaaaatctaaggtacatggtggtaagaggaaatgctga
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integrated database retrieval system
