Salvia hispanica (chia): 125205466
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Entry
125205466 CDS
T09851
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125205466
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
125205466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
zf-RING_2
DurN
Levi_coat
Motif
Other DBs
NCBI-GeneID:
125205466
NCBI-ProteinID:
XP_047960368
LinkDB
All DBs
Position
2:34680798..34696121
Genome browser
AA seq
1791 aa
AA seq
DB search
MSNPAGGGGFGGHHRGITLSNTVHSEVAPCLPLPSLPVFCGGRDQELRLFDNRGGASRRN
ASGADVAGRIADLLRNADVSYLNLKNEESIQPDGYVGKLNITNDVLRHEAESLEYVSPGP
GMESTNRGNLTQSKFFERSMPAINQVPTDSLGTTNYQQDHNANNDIINSSRKPKVKRRTK
ADIPSAPCPDSREGQDAAVGGFCEWLEDICNRAEIPSDDREETEWQSLTQSDLKALVNEI
MSIRSKNLLHIVPADTLSRMLKVLDRQIHRAEGLSIDDCEKLDAEVVSSLYCALESIHAA
LAIMAHDGMPKQIYKEEYIERILDFSRHQILDVMFACDPAYRALHKPNYNLDDEEDDEVE
DFGSSSKKRRISKSVRVRKSTTNRMSGTVNIIVQKLCTIVSYVKQLLLIERLSDSCILQL
VRTSLQTLLVDNIQLLQLKAISLIGGIYYMYTQHRTYMMDETIQILLKLPLSKRVPRTYH
LPDEEQRQIQLVTALLIQMIHHCANLPEVVRLTPGNPSLDISIDADYPSKCHEAVTESCC
LFWSRILQRYTSTKNQDASEVKSMMENLVMDLLTTLNLPEYPASAPILEVLCVLLLQNAG
PKSKDTSARTMAIDLLGTIAARLKHDAVVCRNEKFWIVQVLMDSENSDPSYLRDVCAICL
DSTAERASLECQGCHRPFHLDCIGGREQDVSSRTFDCQVCLCEKQLLVLKTHCESESKDD
QKQNRISKKSSRASSSVTKQEIIQQMLLNYLQDAGSADELNLFMRWFYLCLWYKDDPASP
QKFLYFLARMKSREILRDSFSFSSLLTRDSVKKITLALGQKSSFARGFDKILQVLLAGLR
ENSPVIRAKAMRAVSIIVEADPEVLGNKLVQTAVEGRFCDSAISVREAALELVGKHIASH
PDVGIKYFEKVAERIKDTGVSVRKRAIKIIKDMCTSSTDFSQSTTAFVAIISRINDEESS
IQDLVCKTFYEFWFEEPSGWQNRTFKDNSSVPLEVTKKTEQVAETLRRMSSHQPLAIVIK
RILALDFFPQSAKAAGINPVLLSSVRRRCELMCKCLLEKSLQVAETNSEEGEVRMLPYIL
LLHSFCLVDPTLCAPASDPSQFIITLQPYLKSQSDNRVAAQMLESILFIIDSVLPLLRKL
PETVAEELEQDLKQMIVRHSFLTVVHACIKCLCSVGKVSGKGASVIQYLIQLFYKRLDAL
GFDNKQQVGRSLFCLGLLIRYGSPLLDMSAFNPRNMDVASNINLFKKYLQAEDFIIKVRA
LQALGYVFIACPECMLQKDVGKILEATLSTSADVRLKMQSLQNMYEYLLDAESRMEKDKA
SNDVNNPSADGTSVPVAAGAGDTNICGGIVQLYWNSILARCLDANEHVRQASLKIVEIVL
RQGLVHPITCVPYLIALETDPEEVNAKLSHHLLMNMNEKYPAFCESRLGDGLHLSFIFIR
TMSGDLPEMSNNKSPAKLFNNIKGKGDVGSSTFARHGVARIYKLIRGNRISRNRFMSSIV
HKFETPTCSDSVIPFLMYCAEILALLPFTLPDEPLYLIYTINRVVQVSSGAVESNIKDFL
HLLQGNVHKTNGNGMVQAAQLGSTTNPGSERNMATEGNLTLPMELPNHLYGEESCKDPNT
NPIPSRDPYTISASDFQKIQANFLAAGALQLLLKLKRHLKIVYGLDDIRCQAFSPTEPVK
PGESLGRQNIPFTISDINIDPPNTYEDVMRRYQEFKNALREDTVDYSTYSANIKRKRPPS
TSARRGKAVRMADMDDEEGYDDEDWGNSVGRMNKSAGKRGSYMRTRQRQQL
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcccgccggcggaggcggtttcggggggcaccacaggggcataactctctcg
aacacagttcactcggaggttgcgccgtgcctgccgctgccctcgctcccagtattctgc
ggcgggcgcgatcaggaacttcgcctattcgacaaccgcggcggcgcttccaggaggaat
gctagcggcgctgatgtggcgggaaggatagctgatctcctccgcaatgctgatgtatct
tacttgaatcttaaaaatgaagaaagcattcaaccagatggttatgtgggaaagttaaat
ataaccaatgatgttttgagacatgaggcagaatcacttgaatatgtctctccaggtcct
ggtatggagtcaacaaatcgaggtaatttgacccaatcaaagttctttgagcggagcatg
cctgccataaatcaagtgccaactgactcattagggacaaccaattatcagcaagatcac
aatgctaataatgatattattaactcttcccgaaaaccaaaagtgaaaaggagaacaaaa
gctgacataccgtcagcaccttgtcctgattcccgtgagggtcaagatgcagctgtaggg
ggattttgtgaatggttggaggacatatgtaacagagcagaaattccttctgatgacaga
gaagaaacagaatggcaatcgttgacccaatctgatcttaaggctctagtcaatgaaatc
atgtcaattcgatctaagaatttactccacatagttccagctgacactctttcaaggatg
ttaaaagttttagatcgccagattcatcgagcagaaggactttcaatagatgattgtgag
aagttggatgctgaggtggtatcatccctttattgtgctctggagtcaattcatgcagct
ttagctattatggctcatgatggcatgcctaaacagatttacaaggaagagtatattgaa
aggatcttggatttttcaagacatcaaattttggatgttatgtttgcatgtgatccagca
tatcgggccctacacaaacccaattataatttggatgatgaggaagatgatgaagttgag
gattttggctcaagcagtaagaagaggcgaatttctaagagtgtaagagttagaaaatca
acaacaaaccggatgtctggtacagtaaacattattgttcagaaattgtgtaccattgtc
agttatgttaagcagctgttgttgatagaacgcttatcagatagttgcattctgcaactt
gtgcgaactagtttacagactcttttggtggataatatccagcttttgcagctgaaagct
atcagtttaattggtgggatttattacatgtacactcagcatcggacatatatgatggat
gaaactattcaaatacttctaaagctgccgctttctaaaagagtaccaagaacttatcat
cttccggatgaagaacaaaggcagattcagttagtcactgctctattgattcaaatgatt
catcattgtgcaaatcttcctgaagtcgtgaggctaactcctggaaatccttcactggac
atttctattgatgctgattacccctctaaatgtcatgaggcagttacagagtcatgctgc
ctcttttggagtcgaattcttcagcggtatacaagcacaaaaaatcaggatgcatctgaa
gtgaagtcaatgatggaaaatcttgtgatggatttgctcactactctgaacttaccggag
tatccagcttcagctcctattctagaggttctgtgtgtattactacttcagaatgctggg
ccgaaatcaaaagatacttctgccagaacaatggccattgaccttctcggtacaattgct
gcaaggttaaaacatgatgcggtagtatgtaggaatgaaaagttttggatcgtacaggtc
ttgatggatagtgaaaatagtgaccctagctatctgagagatgtctgtgctatttgtttg
gattcaactgctgaaagggctagtctcgaatgtcaaggctgtcacaggccattccatctt
gattgtataggaggaagagagcaggatgtttcttctcgaacctttgattgtcaggtttgc
ttatgcgagaaacaacttcttgtgttaaaaacgcattgtgagtccgaatcaaaggatgac
cagaaacaaaatcgtatttccaaaaaatcttcccgagcttcatcctcagtaacaaaacag
gagattattcaacaaatgctcctaaattatttgcaggatgcagggtctgcagatgaacta
aacctctttatgcgctggttttatctttgtctttggtataaagatgatcctgcttctcca
caaaagttcctctacttccttgcgaggatgaaatcaagggaaattctgcgagactcgttt
tctttttcttctcttctgacaagggattcagtgaaaaaaattactctggcattgggtcaa
aagagttcctttgctagaggatttgacaagatacttcaagtgcttttggccggcctgagg
gagaactcaccagtgattcgtgctaaggcaatgcgagcggttagtattattgtagaagca
gatcccgaggttttgggtaacaagcttgtgcaaacagcagttgaagggaggttttgtgac
tctgctatatcagtaagagaagcagcacttgagcttgttggaaagcacattgcttcacat
cctgatgttggtataaagtattttgagaaggtagcagagaggattaaggatactggagta
agtgtccgaaaacgagctattaaaattatcaaggatatgtgtacctcctccactgacttt
tcacagagcaccactgcttttgtggcgataatttctcgtatcaatgatgaagaatccagc
atacaggacctggtctgcaagacattttatgagttttggtttgaggagccttctggttgg
caaaaccgtactttcaaagataacagttcggttcctctagaagtgactaagaagacagaa
caggttgctgagactttgagaaggatgtccagtcaccaaccccttgctattgtcattaaa
agaatcttagcccttgatttctttccccaatctgctaaagctgctgggataaaccctgta
ttactttcatccgtacgcaggcgctgtgagctaatgtgcaagtgtctgctggaaaaatca
ttgcaggttgctgagacaaacagtgaggaaggagaagtccgcatgcttccgtatattctt
ctattgcattcattctgtctggtggatcctacattatgtgcaccagcctctgacccttca
cagtttattatcacactacaaccatatttgaagagtcagtctgacaatcgagtggctgct
cagatgctggagagcatattgtttataattgattctgtcttgccattattgcggaaactt
cctgagactgttgcggaggaacttgaacaagacctcaaacaaatgatagtgcgacactct
ttcctgacagttgtccacgcttgcataaaatgtttatgctctgtggggaaagtatcagga
aaaggtgcaagtgttattcagtatcttatccagttgttctacaaacgtctggatgcattg
gggtttgataacaagcagcaagtaggtagatctctgttttgtcttgggttgttgatacgc
tatggtagcccattgttggatatgtctgctttcaacccaagaaacatggatgtagcaagc
aatatcaacttattcaaaaagtatcttcaggctgaagacttcatcattaaagttagggca
ttacaggctttaggttatgtttttattgcttgtcctgaatgtatgctgcaaaaggatgtt
ggtaaaattttggaggcaactttgtccaccagtgctgatgttcgtctgaagatgcaatca
ctacagaacatgtacgagtatcttctggatgcggaaagccgaatggagaaagataaagct
agcaatgatgttaataatccatctgctgatggtaccagtgtccccgttgctgccggtgct
ggcgatactaacatttgtggtggtatagttcagctatattggaatagtatcttagcaaga
tgtctggatgcaaatgaacatgtccgtcaagcttctctcaagattgttgaaattgtgctg
cgccaaggtcttgtacatcctattacttgtgtaccgtatctcattgcacttgaaacagat
ccggaggaagtaaatgcaaagttgtctcatcatctcttgatgaatatgaatgagaagtat
ccagctttctgcgaaagccgtcttggtgatggacttcatttgtcatttattttcattcgt
accatgagtggagatctccctgaaatgtccaataataagtccccagccaaattatttaac
aatattaagggaaaaggagatgttgggtcttcaacatttgcgcggcatggtgttgctcga
atctataagctcattcgtggaaatcgtatttcaagaaacagattcatgtcctccattgta
cacaaatttgaaacaccgacctgcagtgattctgtgataccgtttctaatgtattgcgca
gagattcttgctctactacctttcacattacctgatgagcctctttatttgatctatact
ataaaccgagtggtacaagttagctcgggggcagtagaatcaaacattaaggactttttg
catttattacaaggaaatgttcataaaaccaatgggaatgggatggtacaagccgctcaa
cttggtagcactacaaaccctggtagtgaaagaaacatggcaactgaggggaacctgaca
ctacccatggagttaccgaatcatctttatggggaagaatcatgtaaggatccaaataca
aatcccataccctcgagagatccctataccatctctgcaagtgattttcagaaaatccag
gccaactttctagcagctggagcactgcaactgcttttaaagctcaagaggcacttgaag
attgtttatggcctagatgatatccgatgccaggcattttctcctactgaaccggttaaa
ccaggcgaaagtttaggacggcagaatattccattcactatcagtgatattaatattgac
cctcccaacacatacgaagacgtcatgcggagatatcaggaattcaagaatgccttgagg
gaagacacggttgactattcaacctactcagcaaacatcaagaggaaacggccaccctcc
acgagtgcaagacgagggaaggctgtccgaatggcagatatggatgatgaagaaggctat
gatgatgaagattggggtaacagtgtgggcaggatgaacaagagtgccggcaagagaggt
agttacatgagaacgaggcagcgacaacagttgtaa
DBGET
integrated database retrieval system
