KEGG   Salvia hispanica (chia): 125205499
Entry
125205499         CDS       T09851                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
shis  Salvia hispanica (chia)
Pathway
shis03030  DNA replication
shis03410  Base excision repair
shis03420  Nucleotide excision repair
shis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125205499
   03410 Base excision repair
    125205499
   03420 Nucleotide excision repair
    125205499
   03430 Mismatch repair
    125205499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shis03032]
    125205499
   03036 Chromosome and associated proteins [BR:shis03036]
    125205499
   03400 DNA repair and recombination proteins [BR:shis03400]
    125205499
DNA replication proteins [BR:shis03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125205499
  DNA Replication Termination Factors
   ELG1-RFC complex
    125205499
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125205499
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125205499
  Check point factors
   HRAD17(Rad24)-RFC complex
    125205499
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 AAA_11 AAA_5 Mg_chelatase AAA_14 ResIII AAA_24 AAA_2 AAA_assoc_2 SLFN-g3_helicase nSTAND3 PhoH DUF3853 AAA_19 AAA_28 AAA_30 AAA_7 DUF815 RNA_helicase NPHP3_N IstB_IS21 Parvo_NS1 AAA_25 DNAX_ATPase_lid AAA_18 ATPase_2 TIP49 bpMoxR NB-ARC
Other DBs
NCBI-GeneID: 125205499
NCBI-ProteinID: XP_047960430
LinkDB
Position
2:26108902..26112551
AA seq 341 aa
MAPVLPSTQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSARQGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMTS
RILYICNEEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSKDLISVSGVIP
DGVVQALFTACKSGDFDIADKEVKNVIAEGYPASQMLNHLFDVVVESDDIPDDQKARICK
KFGEADKCLVDGADEYLQLLDVASNIMRALNNMPQEFPFGS
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccagttttaccgagcactcagcaatgggtcgagaaatatcggccgaagcaagtg
aaggatgttgcgcaccaagaagaggtcgttcgagttctcaccaacactttggaaaccact
aattgtccgcacatgctattctatgggcctcctggtacggggaaaacgactacagctctc
gccattgctcaccagctttatgggccggagttatacaagtctagagtactggagctgaat
gctagtgatgatcgtgggataaacgttgttcgtacgaaaattaagaattttgctgctgtt
gctgttggctctgcacgtcaaggtggttatccttgcccgccttacaagattataattctt
gatgaggcagattcgatgactgaagatgcccagaatgccttgcgacgcactatggagaca
tactctaaagttacaagattcttcttcatttgtaactacattagcagaattatcgaaccc
cttgcatctaggtgtgcgaagtttagattcaaaccacttacagaagaaattatgacatct
cgcattctttatatctgcaatgaggaaggtcttaacttggattcagaggcactttcaacc
ttaagttctatctctcaaggtgatctgcgtcgtgctataacatatctacaaggtgctgct
cgcttattcggatcctcaatttcatctaaggacttaatcagcgtgtctggtgtcatcccc
gatggcgttgtgcaggctctctttacagcttgcaaaagtggtgatttcgacatagctgat
aaagaagtaaaaaatgtgattgctgaaggctatccagcttctcagatgctcaatcatttg
tttgatgtagttgtcgaatcagatgacataccagatgaccagaaagcaagaatatgcaag
aaatttggagaggcagataagtgtcttgtagatggagcagacgagtatttgcaactgttg
gatgtggctagcaatatcatgcgtgcgctaaataacatgccacaggaattccctttcgga
agttag

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