Salvia hispanica (chia): 125205511
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Entry
125205511 CDS
T09851
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Module
shis_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125205511
Enzymes [BR:
shis01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125205511
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
125205511
NCBI-ProteinID:
XP_047960457
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Position
2:21525370..21528250
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AA seq
405 aa
AA seq
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MDYHHVTLLFMLLSCIASCAFGATNIFNVLSYGAVGNGRADDSQAFLKAWNAACQGQAKS
GVTPVVYAPAKKTFLLDPLTFKGPCKSSRIYMLVSGNMVAPVKTAWSGKQVEGWILFTSV
NGLVIKGKGVFDGKGASWWPSRPCYNDPARGVLCKGPAGMIFRRCHGLRLDGFTKINGPG
SHMVIMSTHDVVVSNLVIIAPGDSPNTDAIDISGSTKVQVRNSFIATGDDCIAITAGSSN
IDISGITCGPGHGISIGSLGGGGFDVVENVRVRNCTLKNTITGVRIKTVQGGTGYARKIS
FQGIKFEAVDNPIEIEQFYCPLKQNCKNDTSGVAISDVTFSAISGTSIAENVISLKCSQI
NACKNVRLDRVYIKSTTPNKKVSAVCFNAHGTATHTKPAVKCLLP
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggattatcatcatgtcaccttattattcatgctactgtcgtgcattgcttcttgtgca
tttggagcaacaaacattttcaacgttttgagttatggagctgttggaaatggaagagcc
gatgattctcaagcatttttgaaggcttggaatgcagcatgccaaggccaggccaaatcg
ggtgttactcctgtagtttatgcaccagcaaagaagacctttcttttggatcctttgacc
ttcaaaggcccatgcaaatcttctcgcatttatatgctggtgtcaggaaatatggtggca
ccagtaaaaacagcatggagtgggaaacaagtagaaggatggatcttattcactagtgtg
aacggactcgttatcaaaggcaaaggcgtgtttgatggcaaaggcgcttcttggtggcct
tctagaccttgctacaatgatccagccagaggtgttttgtgcaaggggccagctgggatg
atattccggagatgccacgggctaagactggatggatttacgaaaattaacggaccaggt
agccatatggtgattatgtcaactcatgatgtcgtcgtttctaatctggtcataatcgct
cccggggatagccctaatacggatgcaatcgacatctccggctcgacaaaagtacaagtc
agaaattctttcattgcaacaggtgatgactgcattgctataactgcgggatcttccaat
attgatatcagtggaatcacatgtgggcccggtcacggtatcagcattggatcgttggga
ggtggaggattcgatgttgttgaaaacgtacgcgtacgaaattgtactctaaaaaatacc
atcactggagtcagaatcaagactgtacagggaggcacaggatatgcaagaaagatatca
tttcaaggaattaagtttgaggctgtggataatcccattgaaatcgaacaattttactgc
ccacttaaacagaactgcaaaaatgatacatcaggagtggcaataagcgatgtgacattc
agtgcaataagtggaacttcaattgcagaaaatgtgattagtttgaaatgcagccaaata
aacgcatgcaaaaacgtaagattggatcgagtttacatcaaatcaaccactccaaacaag
aaagtttctgcagtttgtttcaatgctcatggaacggccactcacactaagccagctgtc
aagtgccttttgccttag
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